diff --git a/README.md b/README.md index bd1e12b3..5c006ca2 100644 --- a/README.md +++ b/README.md @@ -35,16 +35,19 @@ Then go into Plugins > napari-cellseg3d, and choose which tool to use. - **Review (label)**: This module allows you to review your labels, from predictions or manual labeling, and correct them if needed. It then saves the status of each file in a csv, for easier monitoring. - **Inference**: This module allows you to use pre-trained segmentation algorithms on volumes to automatically label cells and compute statistics. - **Train**: This module allows you to train segmentation algorithms from labeled volumes. -- **Utilities**: This module allows you to perform several actions like cropping your volumes and labels dynamically, by selecting a fixed size volume and moving it around the image; computing prediction scores from ground truth and predicition labels; or converting labels from instance to segmentation and the opposite. +- **Utilities**: This module allows you to perform several actions like cropping your volumes and labels dynamically, by selecting a fixed size volume and moving it around the image; fragment images into smaller cubes for training; or converting labels from instance to segmentation and the opposite. ## News -**New version : v0.1.2** +**New version : v0.2.0** -- Fixed manifest issue for PyPi +- Changed project name to "napari_cellseg3d" to avoid setuptools deprecation +- Small API changes for training/inference from a script +- Some fixes to WandB integration ad csv saving after training Previous additions : +- v0.1.2 :Fixed manifest issue for PyPi - Improved training interface - Unsupervised model : WNet3D - Generate labels directly from raw data! diff --git a/napari_cellseg3d/__init__.py b/napari_cellseg3d/__init__.py index 9b7444d7..e3d41f7a 100644 --- a/napari_cellseg3d/__init__.py +++ b/napari_cellseg3d/__init__.py @@ -1,2 +1,2 @@ """napari-cellseg3d - napari plugin for cell segmentation.""" -__version__ = "0.1.2" +__version__ = "0.2.0" diff --git a/napari_cellseg3d/code_plugins/plugin_helper.py b/napari_cellseg3d/code_plugins/plugin_helper.py index f58b38b7..e143bfb3 100644 --- a/napari_cellseg3d/code_plugins/plugin_helper.py +++ b/napari_cellseg3d/code_plugins/plugin_helper.py @@ -43,7 +43,7 @@ def __init__(self, viewer: "napari.viewer.Viewer"): self.logo_label.setToolTip("Open Github page") self.info_label = ui.make_label( - f"You are using napari-cellseg3d v.{'0.1.2'}\n\n" + f"You are using napari-cellseg3d v.{'0.2.0'}\n\n" f"Plugin for cell segmentation developed\n" f"by the Mathis Lab of Adaptive Motor Control\n\n" f"Code by :\nCyril Achard\nMaxime Vidal\nJessy Lauer\nMackenzie Mathis\n" diff --git a/setup.cfg b/setup.cfg index 549e15aa..04e7a881 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,6 +1,6 @@ [metadata] name = napari_cellseg3d -version = 0.1.2 +version = 0.2.0 [options] packages = find: