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Installation issue with bioformats2raw version #33

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sebgoti opened this issue Feb 20, 2025 · 1 comment
Open

Installation issue with bioformats2raw version #33

sebgoti opened this issue Feb 20, 2025 · 1 comment

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@sebgoti
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sebgoti commented Feb 20, 2025

Hi Bugra, I ran with the following error when trying to install the tool:

❯ conda install -c euro-bioimaging -c conda-forge -c bioconda batchconvert
Channels:
 - euro-bioimaging
 - conda-forge
 - bioconda
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - nothing provides bioformats2raw >=0.8 needed by batchconvert-0.0.6-py312_1

Could not solve for environment specs
The following package could not be installed
└─ batchconvert is not installable because it requires
   └─ bioformats2raw >=0.8 , which does not exist (perhaps a missing channel).
@bugraoezdemir
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Hi @sebgoti ,

Sorry for the late response. The error is likely due to the missing ome channel, which is needed for the version 0.0.6. That's my mistake as I should have updated the installation command in the docs.

Could you try running the command with ome channel included:

conda install -c euro-bioimaging -c conda-forge -c bioconda -c ome batchconvert

Please let me know if that helps.

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