unit-test.yaml

name: Unit Test

on:
  push:
  pull_request:
  workflow_dispatch:
  schedule:
    - cron: '0 7 * * 0'

jobs:
  unit-test:
    if: github.repository == 'KemingHe/strain-seer'
    runs-on: ubuntu-latest
    permissions:
      contents: read
    env:
      PYTHONUNBUFFERED: 1
      PYTHONDONTWRITEBYTECODE: 1
      POETRY_VERSION: 2.1.2
      POETRY_VIRTUALENVS_CREATE: false
      POETRY_NO_INTERACTION: 1
    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.12'

      - name: Install Poetry
        run: |
          curl -sSL https://install.python-poetry.org | python3 -

      - name: Install dependencies
        run: poetry install --with dev

      - name: Run pytest
        run: poetry run pytest --cov --cov-branch --cov-report=xml

      - name: Upload coverage reports to Codecov
        # Pinned to commit hash of release v5.1.2 on 12/18/24
        uses: codecov/codecov-action@1e68e06f1dbfde0e4cefc87efeba9e4643565303
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          slug: ${{ github.repository }}