update to the new automatic_polycube CLI

Author: sebmestrallet

definitions/algorithms/automatic_polycube.yml

@@ -1,18 +1,35 @@
 description: |
   See main app of https://github.com/LIHPC-Computational-Geometry/automatic_polycube
-tet-mesh: { # case of 'automatic_polycube' applied on a 'tet-mesh' subfolder
+tet-mesh: { # case of 'automatic_polycube' applied on a 'tet-mesh' folder
   executable: {
     path: AUTOMATIC_POLYCUBE,
     filename: automatic_polycube,
-    command_line: '{mesh} {labeling} gui=false'
+    command_line: '{mesh} gui=false output={output_labeling}'
   },
   output_folder: 'automatic_polycube_%d',
   arguments: {
     input_files: {
-      surface_mesh: SURFACE_MESH_OBJ
+      mesh: SURFACE_MESH_OBJ
     },
     output_files: {
-      labeling: SURFACE_LABELING_TXT
+      output_labeling: SURFACE_LABELING_TXT
+    }
+  }
+}
+labeling: { # case of 'automatic_polycube' applied on a 'labeling' folder
+  executable: {
+    path: AUTOMATIC_POLYCUBE,
+    filename: automatic_polycube,
+    command_line: '{mesh} {init_labeling} gui=false output={output_labeling}'
+  },
+  output_folder: 'automatic_polycube_%d',
+  arguments: {
+    input_files: {
+      mesh: SURFACE_MESH_OBJ,
+      init_labeling: SURFACE_LABELING_TXT
+    },
+    output_files: {
+      output_labeling: SURFACE_LABELING_TXT
     }
   }
 }

definitions/algorithms/automatic_polycube_gui.yml

@@ -1,10 +1,10 @@
 description: |
   See main app of https://github.com/LIHPC-Computational-Geometry/automatic_polycube
-tet-mesh: { # case of 'automatic_polycube_gui' applied on a 'tet-mesh' subfolder
+tet-mesh: { # case of 'automatic_polycube_gui' applied on a 'tet-mesh' folder
   executable: {
     path: AUTOMATIC_POLYCUBE,
     filename: automatic_polycube,
-    command_line: '{mesh} {labeling} gui=true'
+    command_line: '{mesh} gui=true'
   },
   output_folder: 'automatic_polycube_%d',
   arguments: {
@@ -14,5 +14,24 @@ tet-mesh: { # case of 'automatic_polycube_gui' applied on a 'tet-mesh' subfolder
     output_files: {
       labeling: SURFACE_LABELING_TXT
     }
-  }
+  },
+  note: "Save the output file as {labeling}"
+}
+labeling: { # case of 'automatic_polycube_gui' applied on a 'labeling' folder
+  executable: {
+    path: AUTOMATIC_POLYCUBE,
+    filename: automatic_polycube,
+    command_line: '{mesh} {init_labeling} gui=true output={output_labeling}'
+  },
+  output_folder: 'automatic_polycube_%d',
+  arguments: {
+    input_files: {
+      mesh: SURFACE_MESH_OBJ,
+      init_labeling: SURFACE_LABELING_TXT
+    },
+    output_files: {
+      output_labeling: SURFACE_LABELING_TXT
+    }
+  },
+  note: "Save the output file as {output_labeling}"
 }