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Memory leak with small fragment size libraries in v0.24.0 #602

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ckrushton opened this issue Apr 3, 2025 · 2 comments
Open

Memory leak with small fragment size libraries in v0.24.0 #602

ckrushton opened this issue Apr 3, 2025 · 2 comments
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@ckrushton
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ckrushton commented Apr 3, 2025 •
edited
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First off, I would like to thank you for developing and supporting FASTP for all these years. We've used it quite extensively, and its runtime performance and feature set is AMAZING.

As a result of our FFPE DNA extraction and library prep protocol, we have been generating Illumina WGS data from libraries with very short fragment sizes (down to a mean of 100bp fragments in some really low quality samples). When we run FASTP on these samples we see memory usage absolutely explode (up to 100+GB, seems to increase as fragment size decreases) using the following command:

fastp --stdin --interleaved_in --length_required=30 --dont_eval_duplication --disable_quality_filtering --thread=5 --correction --out1 <fastq_R1> --out2 <fastq_R2> --adapter_fasta=<adapter.fa>--html=<html_path> --json=<json_path>

Image

We tried applying the memory leak patch in v0.24.0, and while memory usage did definitely improve, we are still seeing 100+GB for some samples.

I am definitely not a C programmer but have been running Valgrind to try to find the source of this leak, and it has provided some insights:

==2094941== Mismatched free() / delete / delete []
==2094941==    at 0x4C3A299: operator delete(void*, unsigned long) (vg_replace_malloc.c:935)
==2094941==    by 0x16080B: PairEndProcessor::processPairEnd(ReadPack*, ReadPack*, ThreadConfig*) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x162023: PairEndProcessor::processorTask(ThreadConfig*) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x513AB6C: execute_native_thread_routine (thread.cc:104)
==2094941==    by 0x4E4F1CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2094941==    by 0x5604DD2: clone (in /usr/lib64/libc-2.28.so)
==2094941==  Address 0x9a1b6b0 is 0 bytes inside a block of size 2,048 alloc'd
==2094941==    at 0x4C38B6F: operator new[](unsigned long) (vg_replace_malloc.c:640)
==2094941==    by 0x15D0EA: PairEndProcessor::readerTask(bool) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x513AB6C: execute_native_thread_routine (thread.cc:104)
==2094941==    by 0x4E4F1CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2094941==    by 0x5604DD2: clone (in /usr/lib64/libc-2.28.so)
==2094941== 
==2094941== Mismatched free() / delete / delete []
==2094941==    at 0x4C3A299: operator delete(void*, unsigned long) (vg_replace_malloc.c:935)
==2094941==    by 0x160823: PairEndProcessor::processPairEnd(ReadPack*, ReadPack*, ThreadConfig*) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x162023: PairEndProcessor::processorTask(ThreadConfig*) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x513AB6C: execute_native_thread_routine (thread.cc:104)
==2094941==    by 0x4E4F1CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2094941==    by 0x5604DD2: clone (in /usr/lib64/libc-2.28.so)
==2094941==  Address 0x9783600 is 0 bytes inside a block of size 2,048 alloc'd
==2094941==    at 0x4C38B6F: operator new[](unsigned long) (vg_replace_malloc.c:640)
==2094941==    by 0x15D422: PairEndProcessor::readerTask(bool) (in /home/user/anaconda3/envs/fastp/bin/fastp)
==2094941==    by 0x513AB6C: execute_native_thread_routine (thread.cc:104)
==2094941==    by 0x4E4F1CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2094941==    by 0x5604DD2: clone (in /usr/lib64/libc-2.28.so)

I attempted to patch this leak in peprocessor.cpp using the following:

delete[] leftPack->data;
delete[] rightPack->data;

Which did reduce memory usage, but not significantly.

Valgrind also returned this:

/shared/software/fastp-0.24.0-custom/fastp --stdin --interleaved_in --out1 <out1> --out2 <out2> --adapter_fasta=<adapter.fa> --correction --disable_quality_filtering --thread=4 --html=<html_path> --json=<json_path> --length_required=30 --dont_eval_duplication 
fastp v0.24.0, time used: 89153 seconds
==708938== 
==708938== HEAP SUMMARY:
==708938==     in use at exit: 8,000,127,100 bytes in 500,000,072 blocks
==708938==   total heap usage: 10,813,855,947 allocs, 10,313,855,875 frees, 1,842,462,050,287 bytes allocated
==708938== 
==708938== 8 bytes in 1 blocks are definitely lost in loss record 1 of 28
==708938==    at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==708938==    by 0x44E5FE: PairEndProcessor::PairEndProcessor(Options*) (peprocessor.cpp:20)
==708938==    by 0x454266: Processor::process() (processor.cpp:15)
==708938==    by 0x41257E: main (main.cpp:508)
==708938== 
==708938== 8 bytes in 1 blocks are definitely lost in loss record 2 of 28
==708938==    at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==708938==    by 0x44E61A: PairEndProcessor::PairEndProcessor(Options*) (peprocessor.cpp:21)
==708938==    by 0x454266: Processor::process() (processor.cpp:15)
==708938==    by 0x41257E: main (main.cpp:508)
==708938== 
==708938== 33,461,792 bytes in 2,091,362 blocks are possibly lost in loss record 25 of 28
==708938==    at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==708938==    by 0x4297A6: FastqReaderPair::read() (fastqreader.cpp:433)
==708938==    by 0x44C269: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:876)
==708938==    by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==708938==    by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==708938==    by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==708938== 
==708938== 7,408,783,388 (5,253,274,848 direct, 2,155,508,540 indirect) bytes in 328,329,678 blocks are definitely lost in loss record 28 of 28
==708938==    at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==708938==    by 0x4297A6: FastqReaderPair::read() (fastqreader.cpp:433)
==708938==    by 0x44C269: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:876)
==708938==    by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==708938==    by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==708938==    by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==708938== 
==708938== LEAK SUMMARY:
==708938==    definitely lost: 5,253,274,864 bytes in 328,329,680 blocks
==708938==    indirectly lost: 2,155,508,540 bytes in 134,719,085 blocks
==708938==      possibly lost: 33,461,792 bytes in 2,091,362 blocks
==708938==    still reachable: 557,881,904 bytes in 34,859,945 blocks

I am completely out of my element here, so any advice or thoughts would be greatly appreciated.
@ckrushton
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ckrushton commented Apr 3, 2025 •
edited
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I also ran valgrind --leak-check=full --show-leak-kinds=all on our CI sample, which provided quite verbose output:

Valgrind debugging on FASTP using CI sample ==2096077== Memcheck, a memory error detector ==2096077== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==2096077== Using Valgrind-3.24.0 and LibVEX; rerun with -h for copyright info ==2096077== Command: /shared/software/fastp-0.24.0-custom/fastp --stdin --interleaved_in --out1 /tmp/snakemake_nutcracker_ffpe_7743_R1.fastq --out2 /tmp/snakemake_nutcracker_ffpe_7743_R2.fastq --adapter_fasta=resources/truseq.fa.gz --correction --disable_quality_filtering --thread=2 --html=results/81-fastp/nutcracker_ffpe.fastp.html --json=results/81-fastp/nutcracker_ffpe.fastp.json --length_required=30 --dont_eval_duplication ==2096077== Read1 before filtering: total reads: 9685298 total bases: 1452794700 Q20 bases: 1200457104(82.6309%) Q30 bases: 1150074618(79.1629%)

Read2 before filtering:
total reads: 9685298
total bases: 1452794700
Q20 bases: 1200459447(82.631%)
Q30 bases: 1150085739(79.1637%)

Read1 after filtering:
total reads: 9685298
total bases: 1449279806
Q20 bases: 1197926257(82.6567%)
Q30 bases: 1147679598(79.1896%)

Read2 after filtering:
total reads: 9685298
total bases: 1449279806
Q20 bases: 1197891207(82.6542%)
Q30 bases: 1147652176(79.1878%)

Filtering result:
reads passed filter: 19370596
reads failed due to low quality: 0
reads failed due to too many N: 0
reads failed due to too short: 0
reads with adapter trimmed: 92132
bases trimmed due to adapters: 7029788
reads corrected by overlap analysis: 316194
bases corrected by overlap analysis: 510499

Insert size peak (evaluated by paired-end reads): 269
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5bd28f0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5f858d0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5bd4df0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5f87dd0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5bf78f0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5faa8d0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4ef0b2a0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4f05d8e0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x4198AF: ThreadConfig::cleanup() (threadconfig.cpp:45)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5bf9df0 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x417936: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:9)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5bfde30 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5fad110 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c00330 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5faf610 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c22e30 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5fd2110 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e1d6a20 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e8cd330 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x4198CF: ThreadConfig::cleanup() (threadconfig.cpp:49)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c25330 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x41795C: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:10)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c29370 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5fd4950 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c2b870 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5fd6e50 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c4e370 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5ff9950 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4dd38130 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e19a940 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x4198F0: ThreadConfig::cleanup() (threadconfig.cpp:53)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c50870 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x4179DD: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:12)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c548b0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5ffc190 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c56db0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5ffe690 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c798b0 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x6021190 is 0 bytes inside a block of size 9,400 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4f2a7200 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4ef668e0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43D88A: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:888)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x419911: ThreadConfig::cleanup() (threadconfig.cpp:57)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c7bdb0 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x417A07: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:13)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x41E1B8: FilterResult::~FilterResult() (filterresult.cpp:22)
==2096077== by 0x419932: ThreadConfig::cleanup() (threadconfig.cpp:61)
==2096077== by 0x4199E8: ThreadConfig::~ThreadConfig() (threadconfig.cpp:29)
==2096077== by 0x447ED5: PairEndProcessor::process() (peprocessor.cpp:295)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x5c7fdf0 is 0 bytes inside a block of size 512 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x41E153: FilterResult::FilterResult(Options*, bool) (filterresult.cpp:16)
==2096077== by 0x417991: ThreadConfig::ThreadConfig(Options*, int, bool) (threadconfig.cpp:22)
==2096077== by 0x446D41: PairEndProcessor::process() (peprocessor.cpp:146)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e994e00 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d31ae40 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4cf336e0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d725160 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d7ed020 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d7ec0c0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d637320 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4de90110 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x447F2C: PairEndProcessor::process() (peprocessor.cpp:306)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4dfd1900 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x44769C: PairEndProcessor::process() (peprocessor.cpp:228)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4df33530 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4efc69c0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4efc7aa0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e1733b0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4dde19c0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4dfac7f0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e55eba0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4da34760 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x447F46: PairEndProcessor::process() (peprocessor.cpp:307)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e11fbc0 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476AE: PairEndProcessor::process() (peprocessor.cpp:229)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e17c490 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e266ef0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4da79180 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4d85e5d0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4f1b4640 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e503760 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4edefba0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4f2293e0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x447F60: PairEndProcessor::process() (peprocessor.cpp:308)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e23b840 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476C0: PairEndProcessor::process() (peprocessor.cpp:230)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D613: Stats::~Stats() (stats.cpp:111)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e553ec0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0B6: Stats::Stats(Options*, bool, int, int) (stats.cpp:38)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D624: Stats::~Stats() (stats.cpp:114)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x50866910 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D0E6: Stats::Stats(Options*, bool, int, int) (stats.cpp:41)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D635: Stats::~Stats() (stats.cpp:117)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x50871a40 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D117: Stats::Stats(Options*, bool, int, int) (stats.cpp:44)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D649: Stats::~Stats() (stats.cpp:120)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x507277e0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D14B: Stats::Stats(Options*, bool, int, int) (stats.cpp:47)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D66C: Stats::~Stats() (stats.cpp:124)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e7e9950 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D196: Stats::Stats(Options*, bool, int, int) (stats.cpp:50)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D678: Stats::~Stats() (stats.cpp:125)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e9f1520 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D1D0: Stats::Stats(Options*, bool, int, int) (stats.cpp:53)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D690: Stats::~Stats() (stats.cpp:130)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4eaab390 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x435553: Stats::summarize(bool) (stats.cpp:181)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6C0: Stats::~Stats() (stats.cpp:133)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4eace4a0 is 0 bytes inside a block of size 1,200 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43558D: Stats::summarize(bool) (stats.cpp:183)
==2096077== by 0x43E1CE: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:936)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x43D6E3: Stats::~Stats() (stats.cpp:135)
==2096077== by 0x447F7A: PairEndProcessor::process() (peprocessor.cpp:309)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4e244ee0 is 0 bytes inside a block of size 16,384 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x43D200: Stats::Stats(Options*, bool, int, int) (stats.cpp:57)
==2096077== by 0x43D8F0: Stats::merge(std::vector<Stats*, std::allocator<Stats*> >&) (stats.cpp:892)
==2096077== by 0x4476D2: PairEndProcessor::process() (peprocessor.cpp:231)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x41E1B8: FilterResult::~FilterResult() (filterresult.cpp:22)
==2096077== by 0x447F94: PairEndProcessor::process() (peprocessor.cpp:310)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x4c1549c0 is 0 bytes inside a block of size 512 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x41E153: FilterResult::FilterResult(Options*, bool) (filterresult.cpp:16)
==2096077== by 0x41E2B3: FilterResult::merge(std::vector<FilterResult*, std::allocator<FilterResult*> >&) (filterresult.cpp:38)
==2096077== by 0x4476E4: PairEndProcessor::process() (peprocessor.cpp:232)
==2096077== by 0x4648FE: Processor::process() (processor.cpp:16)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== Mismatched free() / delete / delete []
==2096077== at 0x403E3B0: operator delete(void*) (vg_replace_malloc.c:1131)
==2096077== by 0x4437D1: PairEndProcessor::~PairEndProcessor() (peprocessor.cpp:48)
==2096077== by 0x464906: Processor::process() (processor.cpp:15)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077== Address 0x59d08f0 is 0 bytes inside a block of size 4,104 alloc'd
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4436DF: PairEndProcessor::PairEndProcessor(Options*) (peprocessor.cpp:24)
==2096077== by 0x4648F6: Processor::process() (processor.cpp:15)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==

JSON report: results/81-fastp/nutcracker_ffpe.fastp.json
HTML report: results/81-fastp/nutcracker_ffpe.fastp.html

/shared/software/fastp-0.24.0-custom/fastp --stdin --interleaved_in --out1 /tmp/snakemake_nutcracker_ffpe_7743_R1.fastq --out2 /tmp/snakemake_nutcracker_ffpe_7743_R2.fastq --adapter_fasta=resources/truseq.fa.gz --correction --disable_quality_filtering --thread=2 --html=results/81-fastp/nutcracker_ffpe.fastp.html --json=results/81-fastp/nutcracker_ffpe.fastp.json --length_required=30 --dont_eval_duplication
fastp v0.24.0, time used: 1516 seconds
==2096077==
==2096077== HEAP SUMMARY:
==2096077== in use at exit: 155,089,664 bytes in 9,685,338 blocks
==2096077== total heap usage: 195,384,933 allocs, 185,699,595 frees, 33,957,122,202 bytes allocated
==2096077==
==2096077== 8 bytes in 1 blocks are definitely lost in loss record 1 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x44367E: PairEndProcessor::PairEndProcessor(Options*) (peprocessor.cpp:20)
==2096077== by 0x4648F6: Processor::process() (processor.cpp:15)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== 8 bytes in 1 blocks are definitely lost in loss record 2 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x44369A: PairEndProcessor::PairEndProcessor(Options*) (peprocessor.cpp:21)
==2096077== by 0x4648F6: Processor::process() (processor.cpp:15)
==2096077== by 0x41281E: main (main.cpp:508)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 3 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C4C: FastqReader::read() (fastqreader.cpp:302)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 4 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C6C: FastqReader::read() (fastqreader.cpp:303)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 5 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C8D: FastqReader::read() (fastqreader.cpp:304)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 6 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462CAF: FastqReader::read() (fastqreader.cpp:305)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 7 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462D39: FastqReader::read() (fastqreader.cpp:338)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 8 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C4C: FastqReader::read() (fastqreader.cpp:302)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 9 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C6C: FastqReader::read() (fastqreader.cpp:303)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 10 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462C8D: FastqReader::read() (fastqreader.cpp:304)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 11 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462CAF: FastqReader::read() (fastqreader.cpp:305)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 64 bytes in 2 blocks are indirectly lost in loss record 12 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x462D39: FastqReader::read() (fastqreader.cpp:338)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 76 bytes in 2 blocks are indirectly lost in loss record 13 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462B82: FastqReader::read() (fastqreader.cpp:308)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 76 bytes in 2 blocks are indirectly lost in loss record 14 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462B82: FastqReader::read() (fastqreader.cpp:308)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 302 bytes in 2 blocks are indirectly lost in loss record 15 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462BE2: FastqReader::read() (fastqreader.cpp:316)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 302 bytes in 2 blocks are indirectly lost in loss record 16 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462BF8: FastqReader::read() (fastqreader.cpp:318)
==2096077== by 0x46353E: FastqReaderPair::read() (fastqreader.cpp:424)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 302 bytes in 2 blocks are indirectly lost in loss record 17 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462BE2: FastqReader::read() (fastqreader.cpp:316)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 302 bytes in 2 blocks are indirectly lost in loss record 18 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x4D5D553: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_mutate(unsigned long, unsigned long, char const, unsigned long) (basic_string.tcc:332)
==2096077== by 0x4D5DC27: std::__cxx11::basic_string<char, std::char_traits, std::allocator >::_M_replace(unsigned long, unsigned long, char const*, unsigned long) (basic_string.tcc:548)
==2096077== by 0x462922: assign (basic_string.h:1426)
==2096077== by 0x462922: FastqReader::getLine(std::__cxx11::basic_string<char, std::char_traits, std::allocator >) (fastqreader.cpp:235)
==2096077== by 0x462BF8: FastqReader::read() (fastqreader.cpp:318)
==2096077== by 0x46354F: FastqReaderPair::read() (fastqreader.cpp:427)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 8,192 bytes in 1 blocks are still reachable in loss record 19 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3ECCE: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3ECCE: std::basic_filebuf<char, std::char_traits >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3E8D2: __gnu_cxx::stdio_filebuf<char, std::char_traits >::stdio_filebuf(_IO_FILE, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FD9C: std::ios_base::sync_with_stdio(bool) (ios_init.cc:181)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 8,192 bytes in 1 blocks are still reachable in loss record 20 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3ECCE: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3ECCE: std::basic_filebuf<char, std::char_traits >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3E8D2: __gnu_cxx::stdio_filebuf<char, std::char_traits >::stdio_filebuf(_IO_FILE*, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FDC0: std::ios_base::sync_with_stdio(bool) (ios_init.cc:182)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 8,192 bytes in 1 blocks are still reachable in loss record 21 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3ECCE: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3ECCE: std::basic_filebuf<char, std::char_traits >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3E8D2: __gnu_cxx::stdio_filebuf<char, std::char_traits >::stdio_filebuf(_IO_FILE*, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FDE3: std::ios_base::sync_with_stdio(bool) (ios_init.cc:183)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 32,768 bytes in 1 blocks are still reachable in loss record 22 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3F475: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3F475: std::basic_filebuf<wchar_t, std::char_traits<wchar_t> >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3EA20: __gnu_cxx::stdio_filebuf<wchar_t, std::char_traits<wchar_t> >::stdio_filebuf(_IO_FILE*, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FE4C: std::ios_base::sync_with_stdio(bool) (ios_init.cc:190)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 32,768 bytes in 1 blocks are still reachable in loss record 23 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3F475: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3F475: std::basic_filebuf<wchar_t, std::char_traits<wchar_t> >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3EA20: __gnu_cxx::stdio_filebuf<wchar_t, std::char_traits<wchar_t> >::stdio_filebuf(_IO_FILE*, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FE69: std::ios_base::sync_with_stdio(bool) (ios_init.cc:191)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 32,768 bytes in 1 blocks are still reachable in loss record 24 of 27
==2096077== at 0x403C5BF: operator new[](unsigned long) (vg_replace_malloc.c:729)
==2096077== by 0x4D3F475: _M_allocate_internal_buffer (fstream.tcc:56)
==2096077== by 0x4D3F475: std::basic_filebuf<wchar_t, std::char_traits<wchar_t> >::_M_allocate_internal_buffer() (fstream.tcc:49)
==2096077== by 0x4D3EA20: __gnu_cxx::stdio_filebuf<wchar_t, std::char_traits<wchar_t> >::stdio_filebuf(_IO_FILE*, std::_Ios_Openmode, unsigned long) (stdio_filebuf.h:163)
==2096077== by 0x4D0FE8C: std::ios_base::sync_with_stdio(bool) (ios_init.cc:192)
==2096077== by 0x420413: FastaReader::FastaReader(std::__cxx11::basic_string<char, std::char_traits, std::allocator >, bool) (fastareader.cpp:12)
==2096077== by 0x4616F3: Options::loadFastaAdapters() (options.cpp:60)
==2096077== by 0x410F69: main (main.cpp:225)
==2096077==
==2096077== 1,294,432 bytes in 80,902 blocks are possibly lost in loss record 25 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x463566: FastqReaderPair::read() (fastqreader.cpp:433)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 58,297,168 bytes in 3,643,573 blocks are indirectly lost in loss record 26 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x463566: FastqReaderPair::read() (fastqreader.cpp:433)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== 153,672,336 (95,373,168 direct, 58,299,168 indirect) bytes in 5,960,823 blocks are definitely lost in loss record 27 of 27
==2096077== at 0x403AEFF: operator new(unsigned long) (vg_replace_malloc.c:487)
==2096077== by 0x463566: FastqReaderPair::read() (fastqreader.cpp:433)
==2096077== by 0x4412E9: PairEndProcessor::interleavedReaderTask() (peprocessor.cpp:879)
==2096077== by 0x4D23B64: execute_native_thread_routine (thread.cc:104)
==2096077== by 0x4A381CE: start_thread (in /usr/lib64/libpthread-2.28.so)
==2096077== by 0x51EDDD2: clone (in /usr/lib64/libc-2.28.so)
==2096077==
==2096077== LEAK SUMMARY:
==2096077== definitely lost: 95,373,184 bytes in 5,960,825 blocks
==2096077== indirectly lost: 58,299,168 bytes in 3,643,605 blocks
==2096077== possibly lost: 1,294,432 bytes in 80,902 blocks
==2096077== still reachable: 122,880 bytes in 6 blocks
==2096077== suppressed: 0 bytes in 0 blocks
==2096077==
==2096077== For lists of detected and suppressed errors, rerun with: -s
==2096077== ERROR SUMMARY: 572 errors from 79 contexts (suppressed: 0 from 0)

Note that this CI sample was generated using bamsurgeon, and as such does not have any read-through adapter sequences. I would be more than happy to provide these test FASTQ files if that is helpful!

@sfchen sfchen added the bug label Apr 10, 2025
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sfchen commented Apr 10, 2025

Thank you very much! Can you please provide some data sample, along with the command that I can reproduce this issue?

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