DESCRIPTION

Type: Package
Package: EMtree
Title: Infers Direct Species Association Networks using Tree Averaging
Version: 1.1.0
Authors@R: c(
  person("Raphaëlle", "Momal", role = c("aut", "cre","cph"), email = "rmomaleisenring@gmail.com",
      comment = c(ORCID = "0000-0002-1550-4530"))) 
Description: The spanning tree averaging within an Expectation-Maximization algorithm 
    (Momal, Robin and Ambroise, 2020 <doi:10.1111/2041-210X.13380>) leverages the 
        Matrix Tree Theorem to infer conditional dependence networks, such as direct species association 
            networks.
License: GPL-3
Imports: 
    dplyr,
    ggplot2,
    ggraph,
    huge,
    magrittr,
    Matrix,
    mvtnorm,
    parallel,
    PLNmodels,
    tibble,
    tidygraph,
    vegan,
    gridExtra,
    pillar,
    ade4,
    viridis,
    gmp
Suggests: 
    testthat (>= 2.1.0),
    knitr,
    rmarkdown,
    networkD3,
    pROC,
    tidyr,
    RColorBrewer
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Depends: R (>= 3.5)
VignetteBuilder: knitr
URL: https://rmomal.github.io/EMtree/
BugReports: https://github.com/Rmomal/EMtree/issues
Language: en-US