36 Coordinate self reference (#40)

* Set theme jekyll-theme-slate

* Create index.md

Initialise GH pages

* Fix incorrect creation of var to var references

* Add alias to test

Author: simonoakesepimorphics

binary-array-ld-cli/src/test/kotlin/net/bald/BinaryArrayConvertCliTest.kt

@@ -496,6 +496,9 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, createResource("http://test.binary-array-ld.net/example/")) {
                     statement(RDF.type, BALD.Container)
                     statement(BALD.contains, createResource("http://test.binary-array-ld.net/example/var0"), sortAnon = ::sortRefs) {
+                        statement(createProperty("${TestVocab.prefix}name"), createStringLiteral("var0"))
+                        statement(TestVocab.references, createResource("http://test.binary-array-ld.net/example/var1"))
+                        statement(TestVocab.references, createResource("http://test.binary-array-ld.net/example/var2"))
                         statement(RDF.type, BALD.Array)
                         statement(BALD.references) {
                             statement(RDF.type, BALD.Reference)

binary-array-ld-netcdf/src/main/kotlin/net/bald/netcdf/NetCdfAttribute.kt

@@ -12,7 +12,7 @@ class NetCdfAttribute(
     private val attr: Attribute
 ): net.bald.Attribute {
     private val name: String get() = attr.shortName
-    private val prop: Property get() = parent.parseProperty(name)
+    val prop: Property get() = parent.parseProperty(name)
 
     override val uri: String get() = prop.uri
 

binary-array-ld-netcdf/src/main/kotlin/net/bald/netcdf/NetCdfVar.kt

@@ -69,6 +69,7 @@ class NetCdfVar(
     private fun attributeRefs(): Sequence<NetCdfVar> {
         return v.attributes().let(::source)
             .attributes()
+            .filter { attr -> attr.prop.let(parent.alias::isReferenceProperty) }
             .mapNotNull(NetCdfAttribute::rawValues)
             .flatten()
             .mapNotNull(parent::parseReferences)

binary-array-ld-netcdf/src/test/kotlin/net/bald/netcdf/NetCdfBinaryArrayTest.kt

@@ -370,7 +370,10 @@ class NetCdfBinaryArrayTest {
 
     @Test
     fun vars_withReferenceAttributes_returnsReferences() {
-        val ba = fromCdl("/netcdf/ref-attr.cdl", "http://test.binary-array-ld.net/ref-attr.nc")
+        val alias = javaClass.getResourceAsStream("/turtle/var-alias.ttl").use { input ->
+            ModelFactory.createDefaultModel().read(input, null, "ttl")
+        }.let(ModelAliasDefinition::create)
+        val ba = fromCdl("/netcdf/ref-attr.cdl", "http://test.binary-array-ld.net/ref-attr.nc", alias = alias)
         ContainerVerifier(ba.root).vars {
             variable("http://test.binary-array-ld.net/ref-attr.nc/var0") {
                 dimensions(10, 90, 15)

binary-array-ld-test/src/main/resources/netcdf/ref-attr.cdl

@@ -6,7 +6,8 @@ netcdf attributes {
         d3 = 60 ;
     variables:
         int var0(d0, d1, d2) ;
-            var0:bald__references = "var1 var2" ;
+            var0:test__references = "var1 var2" ;
+            var0:test__name = "var0" ;
         int var1(d1, d2, d3) ;
             var1:test__references = "var2";
         int var2(d2) ;