pref_essential_genes.conseq

rule pref_essential_genes_rnai:
    inputs: 
        script=fileref("scripts/pref_essential_genes_to_csv.py"),
        data={'type': 'dep-matrix', 'label': 'RNAi_merged'}
    outputs: {
        "type": 'preferentially_essential_genes',
        "label": "{{ inputs.data.label }}", # matched in db
        "orig_dataset_id": "{{ inputs.data.orig_dataset_id }}",
        "filename": {"$filename": "pref_essential_genes_rnai_merged.csv"} }
    run "python3 {{inputs.script.filename}} {{inputs.data.filename}} pref_essential_genes_rnai_merged.csv"


rule pref_essential_genes_crispr:
    inputs: 
        script=fileref("scripts/pref_essential_genes_to_csv.py"),
        data={'type': 'dep-matrix', 'label': "Chronos_Combined"} # The default crispr enum
    outputs: {
        "type": 'preferentially_essential_genes',
        "label": "{{ inputs.data.label }}", # matched in db
        "orig_dataset_id": "{{ inputs.data.orig_dataset_id }}",
        "filename": {"$filename": "pref_essential_genes_crispr.csv"} }
    run "python3 {{inputs.script.filename}} {{inputs.data.filename}} pref_essential_genes_crispr.csv"