Merge pull request #21 from SciDAP/master

STAR description in draft3

Author: portah

tools/STAR-job-index.json

@@ -0,0 +1,11 @@
+{
+  "genomeFastaFiles":[{"class": "File", "path": "./test-files/dm3.fa"}],
+
+  "genomeDir": "./dm3/",
+
+  "runMode": "genomeGenerate",
+  "runThreadN": 4,
+  "sjdbGTFfile": {"class": "File", "path":"./test-files/dm3.gtf"},
+  "sjdbOverhang":100
+}
+

tools/STAR-job-rna.json

@@ -0,0 +1,6 @@
+{
+  "readFilesIn": [{"class": "File", "path": "./test-files/SRR1031972.s.fastq"}],
+  "genomeDir": {"class": "File", "path": "./dm3/"},
+  "outFileNamePrefix":"SRR1031972.",
+  "runThreadN": 4
+}