DOC: merge API docs in modules.rst

No need for separate `pyobjcryst` document.

Author: pavoljuhas

doc/manual/source/api/modules.rst

@@ -1,7 +1,134 @@
-pyobjcryst
-==========
+:tocdepth: 2
 
-.. toctree::
-   :maxdepth: 4
+##############
+pyobjcryst API
+##############
 
-   pyobjcryst
+
+pyobjcryst module
+-----------------
+
+.. automodule:: pyobjcryst
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.atom module
+----------------------
+
+.. automodule:: pyobjcryst.atom
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.crystal module
+-------------------------
+
+.. automodule:: pyobjcryst.crystal
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.general module
+-------------------------
+
+.. automodule:: pyobjcryst.general
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.io module
+--------------------
+
+.. automodule:: pyobjcryst.io
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.molecule module
+--------------------------
+
+.. automodule:: pyobjcryst.molecule
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.polyhedron module
+----------------------------
+
+.. automodule:: pyobjcryst.polyhedron
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.refinableobj module
+------------------------------
+
+.. automodule:: pyobjcryst.refinableobj
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.scatterer module
+---------------------------
+
+.. automodule:: pyobjcryst.scatterer
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.scatteringpower module
+---------------------------------
+
+.. automodule:: pyobjcryst.scatteringpower
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.scatteringpowersphere module
+---------------------------------------
+
+.. automodule:: pyobjcryst.scatteringpowersphere
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.spacegroup module
+----------------------------
+
+.. automodule:: pyobjcryst.spacegroup
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.unitcell module
+--------------------------
+
+.. automodule:: pyobjcryst.unitcell
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.utils module
+-----------------------
+
+.. automodule:: pyobjcryst.utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.version module
+-------------------------
+
+.. automodule:: pyobjcryst.version
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pyobjcryst.zscatterer module
+----------------------------
+
+.. automodule:: pyobjcryst.zscatterer
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/manual/source/api/pyobjcryst.rst

@@ -37,7 +37,7 @@ Table of contents
    :titlesonly:
 
    license
-   api/modules.rst
+   api/modules
 
 ========================================================================
 Indices