List of organizations owned fails when using Github Enterprise 3.14

[marcellodesales]

Describe the bug

Simple listing of owned organizations fail, setting it up for Github Enterprise 3.14

    "github": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "-e",
        "GITHUB_PERSONAL_ACCESS_TOKEN",
        "-e",
        "GH_HOST",
        "ghcr.io/github/github-mcp-server"
      ],
      "env": {
        "GITHUB_PERSONAL_ACCESS_TOKEN": "github_pat_11AAA**************4i1Xss",
        "GH_HOST": "https://git.company.com"
      }
    },

Affected version

Please run docker run -i --rm ghcr.io/github/github-mcp-server ./github-mcp-server --version and paste the output below

$  docker run -i --rm ghcr.io/github/github-mcp-server ./github-mcp-server --version
server version v0.1.1 (7ab5d968e065f13a660cd123c2c5d0be6d8b6dbd) 2025-04-07T16:05:06Z

Steps to reproduce the behavior

1. In the prompt write "Show the github orgs that I own"

2. Give permissions to execute the command

3. Wait for the answer, but Claude shows an error message

Expected vs actual behavior

Claude fails and shows an error message

Logs

keys{/key_id}\",\"labels_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/labels{/name}\",\"languages_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/languages\",\"merges_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/merges\",\"milestones_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/milestones{/number}\",\"notifications_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/notifications{?since,all,participating}\",\"pulls_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/pulls{/number}\",\"releases_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/releases{/id}\",\"stargazers_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/stargazers\",\"statuses_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/statuses/{sha}\",\"subscribers_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/subscribers\",\"subscription_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/subscription\",\"tags_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/tags\",\"trees_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/git/trees{/sha}\",\"teams_url\":\"https://git.company.com/api/v3/repos/mdesales/onboarding/teams\"}}]}"}]}}
2025-04-08T00:09:17.181Z [github] [info] Message from server: {"jsonrpc":"2.0","id":37,"result":{"resources":[]}}
2025-04-08T00:09:17.200Z [github] [info] Message from client: {"method":"prompts/list","params":{},"jsonrpc":"2.0","id":38}
2025-04-08T00:09:17.202Z [github] [info] Message from server: {"jsonrpc":"2.0","id":38,"error":{"code":-32601,"message":"prompts not supported"}}
2025-04-08T00:09:22.024Z [github] [info] Message from client: {"method":"resources/list","params":{},"jsonrpc":"2.0","id":39}
2025-04-08T00:09:22.028Z [github] [info] Message from server: {"jsonrpc":"2.0","id":39,"result":{"resources":[]}}
2025-04-08T00:09:22.033Z [github] [info] Message from client: {"method":"prompts/list","params":{},"jsonrpc":"2.0","id":40}
2025-04-08T00:09:22.035Z [github] [info] Message from server: {"jsonrpc":"2.0","id":40,"error":{"code":-32601,"message":"prompts not supported"}}
2025-04-08T00:09:27.024Z [github] [info] Message from client: {"method":"resources/list","params":{},"jsonrpc":"2.0","id":41}
2025-04-08T00:09:27.031Z [github] [info] Message from server: {"jsonrpc":"2.0","id":41,"result":{"resources":[]}}
2025-04-08T00:09:27.036Z [github] [info] Message from client: {"method":"prompts/list","params":{},"jsonrpc":"2.0","id":42}
2025-04-08T00:09:27.044Z [github] [info] Message from server: {"jsonrpc":"2.0","id":42,"error":{"code":-32601,"message":"prompts not supported"}}

[SamMorrowDrums]

Closing as I have created the feature request in #337 and also added the label to this about issues with too much LLM context, as we believe the bug here was that Claude's context window was exhausted. We can re-open if you still have the issue once there are tools for organization information.