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Update 03_run_codes.md
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docs/03_run_codes.md

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```
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# Run the main file (at the root of the project)
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python main_molecules_graph_regression.py --config 'configs/molecules_GraphTransformer_LapPE_ZINC_500k_sparse_graph_BN.json' # for CPU
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python main_molecules_graph_regression.py --gpu_id 0 --config 'molecules_GraphTransformer_LapPE_ZINC_500k_sparse_graph_BN.json' # for GPU
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python main_molecules_graph_regression.py --gpu_id 0 --config 'configs/molecules_GraphTransformer_LapPE_ZINC_500k_sparse_graph_BN.json' # for GPU
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```
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The training and network parameters for each experiment is stored in a json file in the [`configs/`](../configs) directory.
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