From b83f410699b8af4943050426a29034b0cdba0827 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 00:29:51 -0700
Subject: [PATCH 01/13] LAB_version

---
 docs/source/installation.myst | 4 ++--
 docs/source/labs.rst          | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/docs/source/installation.myst b/docs/source/installation.myst
index 542644e..115ca45 100644
--- a/docs/source/installation.myst
+++ b/docs/source/installation.myst
@@ -61,10 +61,10 @@ To ensure you have the same package versions as those built here, run:
 ---
 tags: [skip-execution]
 ---
-pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/v2/requirements.txt
+pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/LAB_VERSION/requirements.txt
 ```
 
-For more specific install instructions go to [ISLP_labs](https://github.com/intro-stat-learning/ISLP_labs/tree/v2).
+For more specific install instructions go to [ISLP_labs](https://github.com/intro-stat-learning/ISLP_labs/tree/LAB_VERSION).
 
 ## Torch requirements
 
diff --git a/docs/source/labs.rst b/docs/source/labs.rst
index 653020d..e103b8e 100644
--- a/docs/source/labs.rst
+++ b/docs/source/labs.rst
@@ -15,7 +15,7 @@ Package versions
 
 To ensure you have the same package versions as those built here, run:
 
-    pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/v2/requirements.txt;
+    pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/LAB_VERSION/requirements.txt;
 
 .. toctree::
    :maxdepth: 1

From 7868525a3cefaf82d347acc38bf29bef7726783a Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 01:31:06 -0700
Subject: [PATCH 02/13] setting a __lab_version__ for building docs

---
 .github/workflows/build_docs.yml | 10 +-------
 ISLP/__init__.py                 |  2 ++
 docs/fix_and_clear_notebooks.py  |  4 ++--
 docs/source/conf.py              | 10 +++++++-
 docs/source/installation.myst    | 15 +++---------
 docs/source/labs.myst            | 39 ++++++++++++++++++++++++++++++++
 docs/source/labs.rst             | 36 -----------------------------
 7 files changed, 56 insertions(+), 60 deletions(-)
 create mode 100644 docs/source/labs.myst
 delete mode 100644 docs/source/labs.rst

diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml
index 7328c69..ce9de47 100644
--- a/.github/workflows/build_docs.yml
+++ b/.github/workflows/build_docs.yml
@@ -5,12 +5,6 @@ name: Build docs
 # Controls when the workflow will run
 on:
   workflow_dispatch:
-    inputs:
-      LABS:
-        description: 'Labs version'
-        required: true
-        default: 'v2'
-        type: string
 
 # A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:
@@ -39,12 +33,10 @@ jobs:
 
       # Checkout labs
       - name: Checkout version of labs
-        env:
-          LABS:  ${{ inputs.LABS }}
         run: |
           git submodule update --init --force docs/ISLP_labs
           cd docs
-          python fix_and_clear_notebooks.py --version $LABS         
+          python fix_and_clear_notebooks.py 
           rm source/labs/Ch*md
 
       - name: Make docs
diff --git a/ISLP/__init__.py b/ISLP/__init__.py
index 0cd8d3e..8fa4574 100644
--- a/ISLP/__init__.py
+++ b/ISLP/__init__.py
@@ -119,3 +119,5 @@ def confusion_table(predicted_labels,
 
 from . import _version
 __version__ = _version.get_versions()['version']
+
+__lab_version__ = 'v2'
diff --git a/docs/fix_and_clear_notebooks.py b/docs/fix_and_clear_notebooks.py
index aac28ee..aa0bd34 100644
--- a/docs/fix_and_clear_notebooks.py
+++ b/docs/fix_and_clear_notebooks.py
@@ -3,8 +3,9 @@
 from argparse import ArgumentParser
 from glob import glob
 
+from ISLP import __lab_version__
 parser = ArgumentParser()
-parser.add_argument('--version', default='v2')
+parser.add_argument('--version', default=__lab_version__)
 args = parser.parse_args()
 version = args.version
 
@@ -84,7 +85,6 @@
 
     open(f'{base}.md', 'w').write(myst)
 
-#    cmd = f'jupytext --sync {base}.ipynb; rm {base}.md'
     cmd = f'jupytext --sync {base}.ipynb; '
     print(f'Running: {cmd}')
     os.system(cmd)
diff --git a/docs/source/conf.py b/docs/source/conf.py
index dac1a2d..b78013f 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -7,7 +7,15 @@
 author = 'Jonathan Taylor'
 
 release = '0.1'
-version = '0.1.0'
+import ISLP
+version = ISLP.__version__
+
+lab_version = ISLP.__lab_version__
+myst_enable_extensions = ['substitution']
+
+myst_substitutions = {
+    "ISLP_lab_link": f"[ISLP_labs {lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})"
+    }
 
 # -- General configuration
 
diff --git a/docs/source/installation.myst b/docs/source/installation.myst
index 115ca45..e89acff 100644
--- a/docs/source/installation.myst
+++ b/docs/source/installation.myst
@@ -3,6 +3,7 @@ file_format: mystnb
 kernelspec:
   name: python3
   display_name: python3
+myst_number_code_blocks: [python]
 ---
 
 
@@ -52,20 +53,10 @@ pip install ISLP
 ```{attention}
 
 Python packages change frequently. The labs here are built
-with specific versions of the various packages. 
+with  {{ ISLP_lab_link }}. Visit the lab git repo for specific instructions
+to install the frozen environment.
 ```
 
-To ensure you have the same package versions as those built here, run:
-
-```{code-cell} ipython3
----
-tags: [skip-execution]
----
-pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/LAB_VERSION/requirements.txt
-```
-
-For more specific install instructions go to [ISLP_labs](https://github.com/intro-stat-learning/ISLP_labs/tree/LAB_VERSION).
-
 ## Torch requirements
 
 The `ISLP` labs use `torch` and various related packages for the lab
diff --git a/docs/source/labs.myst b/docs/source/labs.myst
new file mode 100644
index 0000000..67fd61f
--- /dev/null
+++ b/docs/source/labs.myst
@@ -0,0 +1,39 @@
+---
+file_format: mystnb
+kernelspec:
+  name: python3
+  display_name: python3
+myst_number_code_blocks: python
+---
+
+# Labs
+
+The current version of the labs for `ISLP` are included here.
+
+## Package versions
+
+
+```{attention}
+
+Python packages change frequently. The labs here are built
+with  {{ ISLP_lab_link }}. Visit the lab git repo for specific instructions
+to install the frozen environment.
+```
+
+```{toctree}
+maxdepth: 1
+      
+labs/Ch02-statlearn-lab
+labs/Ch03-linreg-lab
+labs/Ch04-classification-lab
+labs/Ch05-resample-lab   
+labs/Ch06-varselect-lab
+labs/Ch07-nonlin-lab
+labs/Ch08-baggboost-lab
+labs/Ch09-svm-lab
+labs/Ch10-deeplearning-lab
+labs/Ch11-surv-lab
+labs/Ch12-unsup-lab
+labs/Ch13-multiple-lab                               
+```
+
diff --git a/docs/source/labs.rst b/docs/source/labs.rst
deleted file mode 100644
index e103b8e..0000000
--- a/docs/source/labs.rst
+++ /dev/null
@@ -1,36 +0,0 @@
-Labs
-====
-
-The current version of the labs for `ISLP` are included here.
-
-
-Package versions
-----------------
-
-.. attention::
-
-   Python packages change frequently. The labs here are built
-   with specific versions of the various packages. 
-
-
-To ensure you have the same package versions as those built here, run:
-
-    pip install -r https://raw.githubusercontent.com/intro-stat-learning/ISLP_labs/LAB_VERSION/requirements.txt;
-
-.. toctree::
-   :maxdepth: 1
-      
-   labs/Ch02-statlearn-lab
-   labs/Ch03-linreg-lab
-   labs/Ch04-classification-lab
-   labs/Ch05-resample-lab   
-   labs/Ch06-varselect-lab
-   labs/Ch07-nonlin-lab
-   labs/Ch08-baggboost-lab
-   labs/Ch09-svm-lab
-   labs/Ch10-deeplearning-lab
-   labs/Ch11-surv-lab
-   labs/Ch12-unsup-lab
-   labs/Ch13-multiple-lab                               
-
-

From 173c741d4d42a8e316e8fbf44e541422b1220b4c Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 12:50:00 -0700
Subject: [PATCH 03/13] not clearing lab outputs

---
 .github/workflows/build_docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml
index ce9de47..a5cd054 100644
--- a/.github/workflows/build_docs.yml
+++ b/.github/workflows/build_docs.yml
@@ -36,7 +36,7 @@ jobs:
         run: |
           git submodule update --init --force docs/ISLP_labs
           cd docs
-          python fix_and_clear_notebooks.py 
+          python fix_and_clear_notebooks.py --noclear 
           rm source/labs/Ch*md
 
       - name: Make docs

From c4b6f43be41db3ada6eeb1ad61d03f3225078b20 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 13:32:54 -0700
Subject: [PATCH 04/13] including built version of labs

---
 ISLP/__init__.py                |  7 ++++++-
 docs/fix_and_clear_notebooks.py |  9 ++++++---
 docs/source/conf.py             |  7 +++++--
 docs/source/labs.myst           | 11 +++++++++++
 4 files changed, 28 insertions(+), 6 deletions(-)

diff --git a/ISLP/__init__.py b/ISLP/__init__.py
index 8fa4574..2039803 100644
--- a/ISLP/__init__.py
+++ b/ISLP/__init__.py
@@ -120,4 +120,9 @@ def confusion_table(predicted_labels,
 from . import _version
 __version__ = _version.get_versions()['version']
 
-__lab_version__ = 'v2'
+# related to docs
+# __docs_lab_version__ should be a commit on intro-stat-learning/ISLP_labs
+# __docs_lab_ISLP_version__ should be the tag in requirements.txt of __docs_lab_version__
+
+__docs_lab_version__ = 'v2'
+__docs_lab_ISLP_version__ = 'v0.3.18'
diff --git a/docs/fix_and_clear_notebooks.py b/docs/fix_and_clear_notebooks.py
index aa0bd34..853bd5a 100644
--- a/docs/fix_and_clear_notebooks.py
+++ b/docs/fix_and_clear_notebooks.py
@@ -6,6 +6,8 @@
 from ISLP import __lab_version__
 parser = ArgumentParser()
 parser.add_argument('--version', default=__lab_version__)
+parser.add_argument('--clear', dest='clear', action='store_true', default=False)
+parser.add_argument('--noclear', dest='clear', action='store_false')
 args = parser.parse_args()
 version = args.version
 
@@ -64,9 +66,10 @@
     if labname[:4] not in ['Ch10', 'Ch13']:
 
         # clear outputs for all but Ch10,Ch13
-        cmd = f'jupyter nbconvert --ClearOutputPreprocessor.enabled=True --inplace {nbfile}'
-        print(f'Running: {cmd}')
-        os.system(cmd)
+        if args.clear:
+            cmd = f'jupyter nbconvert --ClearOutputPreprocessor.enabled=True --inplace {nbfile}'
+            print(f'Running the clearing command: {cmd}')
+            os.system(cmd)
 
     cmd = f'jupytext --set-formats ipynb,md:myst {nbfile}; jupytext --sync {nbfile}'
     print(f'Running: {cmd}')
diff --git a/docs/source/conf.py b/docs/source/conf.py
index b78013f..38f1805 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -10,11 +10,14 @@
 import ISLP
 version = ISLP.__version__
 
-lab_version = ISLP.__lab_version__
+lab_version = ISLP.__docs_lab_version__
+
 myst_enable_extensions = ['substitution']
 
 myst_substitutions = {
-    "ISLP_lab_link": f"[ISLP_labs {lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})"
+    "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})"
+    "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version}",
+    "ISLP_lab_version": ISLP.__docs_lab_ISLP_version__
     }
 
 # -- General configuration
diff --git a/docs/source/labs.myst b/docs/source/labs.myst
index 67fd61f..80ae7eb 100644
--- a/docs/source/labs.myst
+++ b/docs/source/labs.myst
@@ -8,6 +8,8 @@ myst_number_code_blocks: python
 
 # Labs
 
+{{ ISLP_binder_code }}
+
 The current version of the labs for `ISLP` are included here.
 
 ## Package versions
@@ -18,8 +20,17 @@ The current version of the labs for `ISLP` are included here.
 Python packages change frequently. The labs here are built
 with  {{ ISLP_lab_link }}. Visit the lab git repo for specific instructions
 to install the frozen environment.
+
+
 ```
 
+```{warning}
+The version of the `ISLP` library used to build these labs
+may differ slightly from the one documented here.
+The labs are built with {{ ISLP_lab_version }}.
+```
+
+
 ```{toctree}
 maxdepth: 1
       

From 25067600a0f91bb5334abca3e1aec542b9307db0 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 13:41:10 -0700
Subject: [PATCH 05/13] BF: changed name of docs version

---
 docs/fix_and_clear_notebooks.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/fix_and_clear_notebooks.py b/docs/fix_and_clear_notebooks.py
index 853bd5a..fc16f0a 100644
--- a/docs/fix_and_clear_notebooks.py
+++ b/docs/fix_and_clear_notebooks.py
@@ -3,9 +3,9 @@
 from argparse import ArgumentParser
 from glob import glob
 
-from ISLP import __lab_version__
+from ISLP import __docs_lab_version__
 parser = ArgumentParser()
-parser.add_argument('--version', default=__lab_version__)
+parser.add_argument('--version', default=__docs_lab_version__)
 parser.add_argument('--clear', dest='clear', action='store_true', default=False)
 parser.add_argument('--noclear', dest='clear', action='store_false')
 args = parser.parse_args()

From e1e07f87a7afaaa4ef537bcb21b2e12427ee1799 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 14:00:40 -0700
Subject: [PATCH 06/13] BF: punctuation fix

---
 docs/source/conf.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index 38f1805..08b0cc9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -2,6 +2,8 @@
 
 # -- Project information
 
+import json
+
 project = 'ISLP'
 copyright = '2023, ISLP authors'
 author = 'Jonathan Taylor'
@@ -10,15 +12,17 @@
 import ISLP
 version = ISLP.__version__
 
-lab_version = ISLP.__docs_lab_version__
+docs_version = json.loads(open(os.path.join(dirname, 'docs_version.json')).read())
+lab_version = docs_version['labs']
 
 myst_enable_extensions = ['substitution']
 
 myst_substitutions = {
     "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})"
     "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version}",
-    "ISLP_lab_version": ISLP.__docs_lab_ISLP_version__
+    "ISLP_lab_version": docs_version['library'],
     }
+myst_number_code_blocks = ['python', 'ipython3']
 
 # -- General configuration
 

From 7912716df8ecddb6e0198d7239532d62b6f95eb4 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 14:12:31 -0700
Subject: [PATCH 07/13] BF: syntax errors

---
 docs/source/conf.py | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index 08b0cc9..aa35fa6 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -3,6 +3,7 @@
 # -- Project information
 
 import json
+import os
 
 project = 'ISLP'
 copyright = '2023, ISLP authors'
@@ -12,13 +13,17 @@
 import ISLP
 version = ISLP.__version__
 
+import __main__
+dirname = os.path.split(__main__.__file__)[0]
+print(dirname)
+
 docs_version = json.loads(open(os.path.join(dirname, 'docs_version.json')).read())
 lab_version = docs_version['labs']
 
 myst_enable_extensions = ['substitution']
 
 myst_substitutions = {
-    "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})"
+    "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})",
     "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version}",
     "ISLP_lab_version": docs_version['library'],
     }

From cfb865a2dc7ab056c73997d569e5a085fe5947ad Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 14:41:50 -0700
Subject: [PATCH 08/13] docs version JSON

---
 docs/fix_and_clear_notebooks.py | 16 ++++++++++------
 docs/source/conf.py             |  5 ++++-
 docs/source/docs_version.json   |  4 ++++
 3 files changed, 18 insertions(+), 7 deletions(-)
 create mode 100644 docs/source/docs_version.json

diff --git a/docs/fix_and_clear_notebooks.py b/docs/fix_and_clear_notebooks.py
index fc16f0a..2e42f03 100644
--- a/docs/fix_and_clear_notebooks.py
+++ b/docs/fix_and_clear_notebooks.py
@@ -1,20 +1,24 @@
 import os
+import sys
+import json
 import nbformat
 from argparse import ArgumentParser
 from glob import glob
 
-from ISLP import __docs_lab_version__
+import __main__
+dirname = os.path.split(__main__.__file__)[0]
+print(dirname)
+sys.path.append(os.path.join(dirname, 'source'))
+from conf import docs_version
+#docs_version = json.loads(open(os.path.join(dirname, 'source', 'docs_version.json')).read())
+
 parser = ArgumentParser()
-parser.add_argument('--version', default=__docs_lab_version__)
+parser.add_argument('--version', default=docs_version['labs'])
 parser.add_argument('--clear', dest='clear', action='store_true', default=False)
 parser.add_argument('--noclear', dest='clear', action='store_false')
 args = parser.parse_args()
 version = args.version
 
-import __main__
-dirname = os.path.split(__main__.__file__)[0]
-print(dirname)
-
 for f in glob(os.path.join(dirname, 'source', 'labs', 'Ch14*')):
     os.remove(f)
     print(f)
diff --git a/docs/source/conf.py b/docs/source/conf.py
index aa35fa6..e57aa09 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -17,7 +17,10 @@
 dirname = os.path.split(__main__.__file__)[0]
 print(dirname)
 
-docs_version = json.loads(open(os.path.join(dirname, 'docs_version.json')).read())
+docs_version = {"labs": "v2",
+                "library": "v0.3.18"}
+
+#docs_version = json.loads(open(os.path.join(dirname, 'docs_version.json')).read())
 lab_version = docs_version['labs']
 
 myst_enable_extensions = ['substitution']
diff --git a/docs/source/docs_version.json b/docs/source/docs_version.json
new file mode 100644
index 0000000..1a334d8
--- /dev/null
+++ b/docs/source/docs_version.json
@@ -0,0 +1,4 @@
+{"labs": "v2",
+ "library": "v0.3.18",
+ "comment":"library should be version of ISLP pointed to in ISLP/labs"
+}

From a421b02212978234a0377b193595e7765a96cda5 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 15:02:26 -0700
Subject: [PATCH 09/13] link for library version

---
 docs/source/conf.py           | 4 ++--
 docs/source/installation.myst | 1 -
 docs/source/labs.myst         | 4 ++++
 3 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index e57aa09..ce81b23 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -27,8 +27,8 @@
 
 myst_substitutions = {
     "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})",
-    "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version}",
-    "ISLP_lab_version": docs_version['library'],
+    "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version})",
+    "ISLP_lab_version": "[ISLP/{0}](https://github.com/intro-stat-learning/ISLP_labs/tree/{0})".format(docs_version['library'])
     }
 myst_number_code_blocks = ['python', 'ipython3']
 
diff --git a/docs/source/installation.myst b/docs/source/installation.myst
index e89acff..cb42d7f 100644
--- a/docs/source/installation.myst
+++ b/docs/source/installation.myst
@@ -3,7 +3,6 @@ file_format: mystnb
 kernelspec:
   name: python3
   display_name: python3
-myst_number_code_blocks: [python]
 ---
 
 
diff --git a/docs/source/labs.myst b/docs/source/labs.myst
index 80ae7eb..264277b 100644
--- a/docs/source/labs.myst
+++ b/docs/source/labs.myst
@@ -30,6 +30,10 @@ may differ slightly from the one documented here.
 The labs are built with {{ ISLP_lab_version }}.
 ```
 
+```python
+{{ ISLP_binder_code }}
+```
+
 
 ```{toctree}
 maxdepth: 1

From e892a64ea2220cff594df21c527ad92cdb240ce3 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 15:19:21 -0700
Subject: [PATCH 10/13] BF: wrong repo

---
 ISLP/__init__.py      | 6 ------
 docs/source/conf.py   | 2 +-
 docs/source/labs.myst | 4 ----
 3 files changed, 1 insertion(+), 11 deletions(-)

diff --git a/ISLP/__init__.py b/ISLP/__init__.py
index 2039803..4e7e3f4 100644
--- a/ISLP/__init__.py
+++ b/ISLP/__init__.py
@@ -120,9 +120,3 @@ def confusion_table(predicted_labels,
 from . import _version
 __version__ = _version.get_versions()['version']
 
-# related to docs
-# __docs_lab_version__ should be a commit on intro-stat-learning/ISLP_labs
-# __docs_lab_ISLP_version__ should be the tag in requirements.txt of __docs_lab_version__
-
-__docs_lab_version__ = 'v2'
-__docs_lab_ISLP_version__ = 'v0.3.18'
diff --git a/docs/source/conf.py b/docs/source/conf.py
index ce81b23..b81dcbf 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -28,7 +28,7 @@
 myst_substitutions = {
     "ISLP_lab_link": f"[ISLP_labs/{lab_version}](https://github.com/intro-stat-learning/ISLP_labs/tree/{lab_version})",
     "ISLP_binder_code": f"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intro-stat-learning/ISLP_labs/{lab_version})",
-    "ISLP_lab_version": "[ISLP/{0}](https://github.com/intro-stat-learning/ISLP_labs/tree/{0})".format(docs_version['library'])
+    "ISLP_lab_version": "[ISLP/{0}](https://github.com/intro-stat-learning/ISLP/tree/{0})".format(docs_version['library'])
     }
 myst_number_code_blocks = ['python', 'ipython3']
 
diff --git a/docs/source/labs.myst b/docs/source/labs.myst
index 264277b..80ae7eb 100644
--- a/docs/source/labs.myst
+++ b/docs/source/labs.myst
@@ -30,10 +30,6 @@ may differ slightly from the one documented here.
 The labs are built with {{ ISLP_lab_version }}.
 ```
 
-```python
-{{ ISLP_binder_code }}
-```
-
 
 ```{toctree}
 maxdepth: 1

From 6612f087c8290e9dd990264c30ed960ab4361594 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Wed, 9 Aug 2023 15:37:17 -0700
Subject: [PATCH 11/13] update message about binder

---
 docs/source/labs.myst | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/docs/source/labs.myst b/docs/source/labs.myst
index 80ae7eb..373c500 100644
--- a/docs/source/labs.myst
+++ b/docs/source/labs.myst
@@ -28,6 +28,10 @@ to install the frozen environment.
 The version of the `ISLP` library used to build these labs
 may differ slightly from the one documented here.
 The labs are built with {{ ISLP_lab_version }}.
+
+The [Binder](http://mybinder.org) link above will run {{ ISLP_lab_link }} with
+library version {{ ISLP_lab_version }}.
+
 ```
 
 

From ef199bf2557a253081d84954027c9d2918cbf55d Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Tue, 4 Jun 2024 13:49:58 -0700
Subject: [PATCH 12/13] some update to doc build process

---
 docs/source/conf.py                          | 10 +++-------
 docs/source/docs_version.json                |  4 ++--
 docs/{ => source}/fix_and_clear_notebooks.py |  5 +----
 3 files changed, 6 insertions(+), 13 deletions(-)
 rename docs/{ => source}/fix_and_clear_notebooks.py (92%)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index b81dcbf..c1e337c 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -9,18 +9,14 @@
 copyright = '2023, ISLP authors'
 author = 'Jonathan Taylor'
 
-release = '0.1'
 import ISLP
 version = ISLP.__version__
 
-import __main__
-dirname = os.path.split(__main__.__file__)[0]
-print(dirname)
 
-docs_version = {"labs": "v2",
-                "library": "v0.3.18"}
+# this should agree with
+docs_version = {"labs": "v2.2",
+                "library": "v0.4"}
 
-#docs_version = json.loads(open(os.path.join(dirname, 'docs_version.json')).read())
 lab_version = docs_version['labs']
 
 myst_enable_extensions = ['substitution']
diff --git a/docs/source/docs_version.json b/docs/source/docs_version.json
index 1a334d8..d5c8575 100644
--- a/docs/source/docs_version.json
+++ b/docs/source/docs_version.json
@@ -1,4 +1,4 @@
-{"labs": "v2",
- "library": "v0.3.18",
+{"labs": "v2.2",
+ "library": "v0.4",
  "comment":"library should be version of ISLP pointed to in ISLP/labs"
 }
diff --git a/docs/fix_and_clear_notebooks.py b/docs/source/fix_and_clear_notebooks.py
similarity index 92%
rename from docs/fix_and_clear_notebooks.py
rename to docs/source/fix_and_clear_notebooks.py
index 2e42f03..87e1254 100644
--- a/docs/fix_and_clear_notebooks.py
+++ b/docs/source/fix_and_clear_notebooks.py
@@ -6,11 +6,8 @@
 from glob import glob
 
 import __main__
-dirname = os.path.split(__main__.__file__)[0]
-print(dirname)
-sys.path.append(os.path.join(dirname, 'source'))
+dirname = os.path.abspath(os.path.join(os.path.split(__main__.__file__)[0], '..'))
 from conf import docs_version
-#docs_version = json.loads(open(os.path.join(dirname, 'source', 'docs_version.json')).read())
 
 parser = ArgumentParser()
 parser.add_argument('--version', default=docs_version['labs'])

From 2a682c62917564e7abe7ba9cc82c4c950bd99d09 Mon Sep 17 00:00:00 2001
From: Jonathan Taylor <jonathan.taylor@stanford.edu>
Date: Tue, 4 Jun 2024 13:52:18 -0700
Subject: [PATCH 13/13] moved the fix notebooks script

---
 .github/workflows/build_docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml
index a5cd054..1802a4a 100644
--- a/.github/workflows/build_docs.yml
+++ b/.github/workflows/build_docs.yml
@@ -36,7 +36,7 @@ jobs:
         run: |
           git submodule update --init --force docs/ISLP_labs
           cd docs
-          python fix_and_clear_notebooks.py --noclear 
+          python source/fix_and_clear_notebooks.py --noclear 
           rm source/labs/Ch*md
 
       - name: Make docs