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committedNov 1, 2024·
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‎_data/publications/publications.csv

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pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages
2+
39420185,PMC11487139,10.1038/s41467-024-53148-x,Multimodal gradients of basal forebrain connectivity across the neocortex,"['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']",2024,10,18,Nat Commun,15,1,8990
3+
39229062,PMC11370384,10.1101/2024.08.19.608590,The developing hippocampus: Microstructural evolution through childhood and adolescence,"['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']",2024,8,19,bioRxiv,,,
4+
38822981,,10.1007/s11548-024-03186-z,MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs,"['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']",2024,7,1,Int J Comput Assist Radiol Surg,19,7,1469-1472
5+
38951528,PMC11217278,10.1038/s41531-024-00731-0,Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease,"['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2024,6,29,NPJ Parkinsons Dis,10,1,128
6+
38839341,PMC11154849,10.1523/JNEUROSCI.1705-23.2024,Diffusion MRI of the Hippocampus,"['Karat BG', 'Kohler S', 'Khan AR']",2024,6,5,J Neurosci,44,23,
27
38446857,,10.1073/pnas.2310044121,"Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2024,3,12,Proc Natl Acad Sci U S A,121,11.0,e2310044121
38
38377722,,10.1016/j.nicl.2024.103577,Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study,"['Alushaj E', 'Handfield-Jones N', 'Kuurstra A', 'Morava A', 'Menon RS', 'Owen AM', 'Sharma M', 'Khan AR', 'MacDonald PA']",2024,2,17,Neuroimage Clin,41,,103577
49
38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1.0,1985
510
38235918,,10.1002/jor.25785,Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants,"['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']",2024,1,18,J Orthop Res,,,
11+
39144115,PMC11207789,10.1093/schizbullopen/sgae010,Cortical Network Disruption Is Minimal in Early Stages of Psychosis,"['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']",2024,1,1,Schizophr Bull Open,5,1,sgae010
612
37956092,PMC10642966,10.7554/eLife.88404,Evaluation of surface-based hippocampal registration using ground-truth subfield definitions,"['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']",2023,11,13,Elife,12,,
713
37864501,,10.1111/jnc.15990,Focal acetylcholinergic modulation of the human midcingulo-insular network during attention: Meta-analytic neuroimaging and behavioral evidence,"['Chakraborty S', 'Lee SK', 'Arnold SM', 'Haast RAM', 'Khan AR', 'Schmitz TW']",2023,10,21,J Neurochem,,,
814
37663773,PMC10474320,10.1016/j.dib.2023.109513,A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects,"['Xiao Y', 'Gilmore G', 'Kai J', 'Lau JC', 'Peters T', 'Khan AR']",2023,10,1,Data Brief,50,,109513

‎get_publications.ipynb

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@@ -67,10 +67,10 @@
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@@ -187,7 +187,7 @@
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"text": [
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"Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n",
189189
" (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n",
190-
" \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n"
190+
" \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 83\n"
191191
]
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},
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{
@@ -201,7 +201,7 @@
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204+
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" df = df_old.append(new_pubs)\n"
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]
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@@ -275,16 +275,16 @@
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@@ -294,10 +294,34 @@
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"text": [
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"71 total articles found.\n",
298-
"0 new articles found.\n",
297+
"77 total articles found.\n",
298+
"6 new articles found.\n",
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"\n",
300-
"New publications found:\n"
300+
"New publications found:\n",
301+
"Title: Multimodal gradients of basal forebrain connectivity across the neocortex (Nat Commun)\n",
302+
"Authors: ['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']\n",
303+
"Journal (Date): Nat Commun (10/18/2024)\n",
304+
"\n",
305+
"Title: The developing hippocampus: Microstructural evolution through childhood and adolescence (bioRxiv)\n",
306+
"Authors: ['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']\n",
307+
"Journal (Date): bioRxiv (8/19/2024)\n",
308+
"\n",
309+
"Title: Cortical Network Disruption Is Minimal in Early Stages of Psychosis (Schizophr Bull Open)\n",
310+
"Authors: ['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']\n",
311+
"Journal (Date): Schizophr Bull Open (1/1/2024)\n",
312+
"\n",
313+
"Title: Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease (NPJ Parkinsons Dis)\n",
314+
"Authors: ['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']\n",
315+
"Journal (Date): NPJ Parkinsons Dis (6/29/2024)\n",
316+
"\n",
317+
"Title: Diffusion MRI of the Hippocampus (J Neurosci)\n",
318+
"Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n",
319+
"Journal (Date): J Neurosci (6/5/2024)\n",
320+
"\n",
321+
"Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n",
322+
"Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n",
323+
"Journal (Date): Int J Comput Assist Radiol Surg (7/1/2024)\n",
324+
"\n"
301325
]
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}
303327
],
@@ -323,16 +347,16 @@
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@@ -374,14 +398,132 @@
374398
" </tr>\n",
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" <tbody>\n",
401+
" <tr>\n",
402+
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403+
" <td>39420185</td>\n",
404+
" <td>PMC11487139</td>\n",
405+
" <td>10.1038/s41467-024-53148-x</td>\n",
406+
" <td>Multimodal gradients of basal forebrain connec...</td>\n",
407+
" <td>[Chakraborty S, Haast RAM, Onuska KM, Kanel P,...</td>\n",
408+
" <td>2024</td>\n",
409+
" <td>10</td>\n",
410+
" <td>18</td>\n",
411+
" <td>Nat Commun</td>\n",
412+
" <td>15</td>\n",
413+
" <td>1</td>\n",
414+
" <td>8990</td>\n",
415+
" </tr>\n",
416+
" <tr>\n",
417+
" <th>1</th>\n",
418+
" <td>39229062</td>\n",
419+
" <td>PMC11370384</td>\n",
420+
" <td>10.1101/2024.08.19.608590</td>\n",
421+
" <td>The developing hippocampus: Microstructural ev...</td>\n",
422+
" <td>[Karat BG, Genc S, Raven EP, Palombo M, Khan A...</td>\n",
423+
" <td>2024</td>\n",
424+
" <td>8</td>\n",
425+
" <td>19</td>\n",
426+
" <td>bioRxiv</td>\n",
427+
" <td></td>\n",
428+
" <td></td>\n",
429+
" <td></td>\n",
430+
" </tr>\n",
431+
" <tr>\n",
432+
" <th>2</th>\n",
433+
" <td>39144115</td>\n",
434+
" <td>PMC11207789</td>\n",
435+
" <td>10.1093/schizbullopen/sgae010</td>\n",
436+
" <td>Cortical Network Disruption Is Minimal in Earl...</td>\n",
437+
" <td>[Van Dyken PC, MacKinley M, Khan AR, Palaniyap...</td>\n",
438+
" <td>2024</td>\n",
439+
" <td>1</td>\n",
440+
" <td>1</td>\n",
441+
" <td>Schizophr Bull Open</td>\n",
442+
" <td>5</td>\n",
443+
" <td>1</td>\n",
444+
" <td>sgae010</td>\n",
445+
" </tr>\n",
446+
" <tr>\n",
447+
" <th>3</th>\n",
448+
" <td>38951528</td>\n",
449+
" <td>PMC11217278</td>\n",
450+
" <td>10.1038/s41531-024-00731-0</td>\n",
451+
" <td>Increased mean diffusivity of the caudal motor...</td>\n",
452+
" <td>[Alushaj E, Hemachandra D, Ganjavi H, Seergobi...</td>\n",
453+
" <td>2024</td>\n",
454+
" <td>6</td>\n",
455+
" <td>29</td>\n",
456+
" <td>NPJ Parkinsons Dis</td>\n",
457+
" <td>10</td>\n",
458+
" <td>1</td>\n",
459+
" <td>128</td>\n",
460+
" </tr>\n",
461+
" <tr>\n",
462+
" <th>4</th>\n",
463+
" <td>38839341</td>\n",
464+
" <td>PMC11154849</td>\n",
465+
" <td>10.1523/JNEUROSCI.1705-23.2024</td>\n",
466+
" <td>Diffusion MRI of the Hippocampus</td>\n",
467+
" <td>[Karat BG, Kohler S, Khan AR]</td>\n",
468+
" <td>2024</td>\n",
469+
" <td>6</td>\n",
470+
" <td>5</td>\n",
471+
" <td>J Neurosci</td>\n",
472+
" <td>44</td>\n",
473+
" <td>23</td>\n",
474+
" <td></td>\n",
475+
" </tr>\n",
476+
" <tr>\n",
477+
" <th>5</th>\n",
478+
" <td>38822981</td>\n",
479+
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" <td>MRI-degad: toward accurate conversion of gadol...</td>\n",
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" <td>[Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ...</td>\n",
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