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116 | 116 | "id": "da017a87",
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124 | 124 | },
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125 | 125 | "tags": []
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134 | 134 | "id": "700613de",
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135 | 135 | "metadata": {
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137 |
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147 | 147 | "status": "completed"
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148 | 148 | },
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149 | 149 | "tags": []
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165 | 165 | "id": "2ad1de07",
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166 | 166 | "metadata": {
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167 | 167 | "execution": {
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168 |
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176 | 176 | "exception": false,
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178 | 178 | "status": "completed"
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179 | 179 | },
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180 | 180 | "scrolled": true,
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187 | 187 | "text": [
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188 | 188 | "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n",
|
189 | 189 | " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n",
|
190 |
| - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n" |
| 190 | + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 79\n" |
191 | 191 | ]
|
192 | 192 | },
|
193 | 193 | {
|
|
201 | 201 | "name": "stderr",
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202 | 202 | "output_type": "stream",
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203 | 203 | "text": [
|
204 |
| - "/tmp/ipykernel_1999/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", |
| 204 | + "/tmp/ipykernel_1996/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", |
205 | 205 | " df = df_old.append(new_pubs)\n"
|
206 | 206 | ]
|
207 | 207 | }
|
|
275 | 275 | "id": "70df731e",
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276 | 276 | "metadata": {
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277 | 277 | "execution": {
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278 |
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279 |
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280 |
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281 |
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282 | 282 | },
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283 | 283 | "papermill": {
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284 |
| - "duration": 0.010465, |
285 |
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| 284 | + "duration": 0.011006, |
| 285 | + "end_time": "2024-07-01T05:12:37.770998", |
286 | 286 | "exception": false,
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287 |
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| 287 | + "start_time": "2024-07-01T05:12:37.759992", |
288 | 288 | "status": "completed"
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289 | 289 | },
|
290 | 290 | "tags": []
|
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294 | 294 | "name": "stdout",
|
295 | 295 | "output_type": "stream",
|
296 | 296 | "text": [
|
297 |
| - "71 total articles found.\n", |
298 |
| - "0 new articles found.\n", |
| 297 | + "73 total articles found.\n", |
| 298 | + "2 new articles found.\n", |
299 | 299 | "\n",
|
300 |
| - "New publications found:\n" |
| 300 | + "New publications found:\n", |
| 301 | + "Title: Diffusion MRI of the Hippocampus (J Neurosci)\n", |
| 302 | + "Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n", |
| 303 | + "Journal (Date): J Neurosci (6/5/2024)\n", |
| 304 | + "\n", |
| 305 | + "Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n", |
| 306 | + "Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n", |
| 307 | + "Journal (Date): Int J Comput Assist Radiol Surg (6/1/2024)\n", |
| 308 | + "\n" |
301 | 309 | ]
|
302 | 310 | }
|
303 | 311 | ],
|
|
323 | 331 | "id": "e76e9b21",
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324 | 332 | "metadata": {
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325 | 333 | "execution": {
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326 |
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327 |
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328 |
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329 |
| - "shell.execute_reply": "2024-06-01T05:12:50.427160Z" |
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330 | 338 | },
|
331 | 339 | "papermill": {
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332 |
| - "duration": 0.018351, |
333 |
| - "end_time": "2024-06-01T05:12:50.429074", |
| 340 | + "duration": 0.022067, |
| 341 | + "end_time": "2024-07-01T05:12:37.795063", |
334 | 342 | "exception": false,
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335 |
| - "start_time": "2024-06-01T05:12:50.410723", |
| 343 | + "start_time": "2024-07-01T05:12:37.772996", |
336 | 344 | "status": "completed"
|
337 | 345 | },
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338 | 346 | "tags": []
|
|
374 | 382 | " </tr>\n",
|
375 | 383 | " </thead>\n",
|
376 | 384 | " <tbody>\n",
|
| 385 | + " <tr>\n", |
| 386 | + " <th>0</th>\n", |
| 387 | + " <td>38839341</td>\n", |
| 388 | + " <td>PMC11154849</td>\n", |
| 389 | + " <td>10.1523/JNEUROSCI.1705-23.2024</td>\n", |
| 390 | + " <td>Diffusion MRI of the Hippocampus</td>\n", |
| 391 | + " <td>[Karat BG, Kohler S, Khan AR]</td>\n", |
| 392 | + " <td>2024</td>\n", |
| 393 | + " <td>6</td>\n", |
| 394 | + " <td>5</td>\n", |
| 395 | + " <td>J Neurosci</td>\n", |
| 396 | + " <td>44</td>\n", |
| 397 | + " <td>23</td>\n", |
| 398 | + " <td></td>\n", |
| 399 | + " </tr>\n", |
| 400 | + " <tr>\n", |
| 401 | + " <th>1</th>\n", |
| 402 | + " <td>38822981</td>\n", |
| 403 | + " <td></td>\n", |
| 404 | + " <td>10.1007/s11548-024-03186-z</td>\n", |
| 405 | + " <td>MRI-degad: toward accurate conversion of gadol...</td>\n", |
| 406 | + " <td>[Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ...</td>\n", |
| 407 | + " <td>2024</td>\n", |
| 408 | + " <td>6</td>\n", |
| 409 | + " <td>1</td>\n", |
| 410 | + " <td>Int J Comput Assist Radiol Surg</td>\n", |
| 411 | + " <td></td>\n", |
| 412 | + " <td></td>\n", |
| 413 | + " <td></td>\n", |
| 414 | + " </tr>\n", |
377 | 415 | " </tbody>\n",
|
378 | 416 | "</table>\n",
|
379 | 417 | "</div>"
|
380 | 418 | ],
|
381 | 419 | "text/plain": [
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382 |
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383 |
| - "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", |
384 |
| - "Index: []" |
| 420 | + " pmid pmcid doi \\\n", |
| 421 | + "0 38839341 PMC11154849 10.1523/JNEUROSCI.1705-23.2024 \n", |
| 422 | + "1 38822981 10.1007/s11548-024-03186-z \n", |
| 423 | + "\n", |
| 424 | + " title \\\n", |
| 425 | + "0 Diffusion MRI of the Hippocampus \n", |
| 426 | + "1 MRI-degad: toward accurate conversion of gadol... \n", |
| 427 | + "\n", |
| 428 | + " authors year month day \\\n", |
| 429 | + "0 [Karat BG, Kohler S, Khan AR] 2024 6 5 \n", |
| 430 | + "1 [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ... 2024 6 1 \n", |
| 431 | + "\n", |
| 432 | + " journal volume issue pages \n", |
| 433 | + "0 J Neurosci 44 23 \n", |
| 434 | + "1 Int J Comput Assist Radiol Surg " |
385 | 435 | ]
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386 | 436 | },
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387 | 437 | "execution_count": 6,
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416 | 466 | },
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417 | 467 | "papermill": {
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418 | 468 | "default_parameters": {},
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421 | 471 | "environment_variables": {},
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422 | 472 | "exception": null,
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423 | 473 | "input_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb",
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424 | 474 | "output_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb",
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425 | 475 | "parameters": {},
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426 |
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427 | 477 | "version": "2.3.3"
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428 | 478 | },
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429 | 479 | "vscode": {
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