diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 26dfaef..d8040ef 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,13 +1,24 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +40231305,PMC11994302,10.1016/j.bpsgos.2025.100472,Stable White Matter Structure in the First Three Years After Psychosis Onset,"['Van Dyken PC', 'Yang K', 'Faria AV', 'Sawa A', 'MacKinley M', 'Khan AR', 'Palaniyappan L']",2025,5,1,Biol Psychiatry Glob Open Sci,5,3,100472 +40268921,PMC12019255,10.1038/s41531-025-00916-1,Midbrain and pallidal iron changes identify patients with REM sleep behaviour disorder and Parkinson's disease,"['Alushaj E', 'Kuurstra A', 'Menon RS', 'Ganjavi H', 'Morava A', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2025,4,23,NPJ Parkinsons Dis,11,1,84 +40202728,PMC11983296,10.1001/jamapsychiatry.2025.0432,Convergence of Cannabis and Psychosis on the Dopamine System,"['Ahrens J', 'Ford SD', 'Schaefer B', 'Reese D', 'Khan AR', 'Tibbo P', 'Rabin R', 'Cassidy CM', 'Palaniyappan L']",2025,4,9,JAMA Psychiatry,,, +40113845,PMC11926199,10.1038/s41598-025-93033-1,Gauge equivariant convolutional neural networks for diffusion MRI,"['Hussain U', 'Khan AR']",2025,3,20,Sci Rep,15,1,9631 +39420185,PMC11487139,10.1038/s41467-024-53148-x,Multimodal gradients of basal forebrain connectivity across the neocortex,"['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']",2024,10,18,Nat Commun,15,1,8990 +39229062,PMC11370384,10.1101/2024.08.19.608590,The developing hippocampus: Microstructural evolution through childhood and adolescence,"['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']",2024,8,19,bioRxiv,,, +38822981,,10.1007/s11548-024-03186-z,MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs,"['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']",2024,7,1,Int J Comput Assist Radiol Surg,19,7,1469-1472 +38951528,PMC11217278,10.1038/s41531-024-00731-0,Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease,"['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2024,6,29,NPJ Parkinsons Dis,10,1,128 +38839341,PMC11154849,10.1523/JNEUROSCI.1705-23.2024,Diffusion MRI of the Hippocampus,"['Karat BG', 'Kohler S', 'Khan AR']",2024,6,5,J Neurosci,44,23, 38446857,,10.1073/pnas.2310044121,"Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2024,3,12,Proc Natl Acad Sci U S A,121,11.0,e2310044121 38377722,,10.1016/j.nicl.2024.103577,Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study,"['Alushaj E', 'Handfield-Jones N', 'Kuurstra A', 'Morava A', 'Menon RS', 'Owen AM', 'Sharma M', 'Khan AR', 'MacDonald PA']",2024,2,17,Neuroimage Clin,41,,103577 38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1.0,1985 38235918,,10.1002/jor.25785,Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants,"['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']",2024,1,18,J Orthop Res,,, +39144115,PMC11207789,10.1093/schizbullopen/sgae010,Cortical Network Disruption Is Minimal in Early Stages of Psychosis,"['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']",2024,1,1,Schizophr Bull Open,5,1,sgae010 37956092,PMC10642966,10.7554/eLife.88404,Evaluation of surface-based hippocampal registration using ground-truth subfield definitions,"['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']",2023,11,13,Elife,12,, 37864501,,10.1111/jnc.15990,Focal acetylcholinergic modulation of the human midcingulo-insular network during attention: Meta-analytic neuroimaging and behavioral evidence,"['Chakraborty S', 'Lee SK', 'Arnold SM', 'Haast RAM', 'Khan AR', 'Schmitz TW']",2023,10,21,J Neurochem,,, 37663773,PMC10474320,10.1016/j.dib.2023.109513,A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects,"['Xiao Y', 'Gilmore G', 'Kai J', 'Lau JC', 'Peters T', 'Khan AR']",2023,10,1,Data Brief,50,,109513 37797434,PMC10568416,10.1016/j.nicl.2023.103519,Subregional analysis of striatum iron in Parkinson's disease and rapid eye movement sleep behaviour disorder,"['Alushaj E', 'Hemachandra D', 'Kuurstra A', 'Menon RS', 'Ganjavi H', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2023,9,28,Neuroimage Clin,40,,103519 37615057,,10.1002/hbm.26461,Mapping the macrostructure and microstructure of the in vivo human hippocampus using diffusion MRI,"['Karat BG', 'DeKraker J', 'Hussain U', 'Kohler S', 'Khan AR']",2023,8,24,Hum Brain Mapp,,, +37503042,PMC10370151,10.1101/2023.07.19.549533,"Novel insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2023,7,21,bioRxiv,,, 37438367,PMC10338502,10.1038/s41597-023-02330-9,Magnetic resonance imaging datasets with anatomical fiducials for quality control and registration,"['Taha A', 'Gilmore G', 'Abbass M', 'Kai J', 'Kuehn T', 'Demarco J', 'Gupta G', 'Zajner C', 'Cao D', 'Chevalier R', 'Ahmed A', 'Hadi A', 'Karat BG', 'Stanley OW', 'Park PJ', 'Ferko KM', 'Hemachandra D', 'Vassallo R', 'Jach M', 'Thurairajah A', 'Wong S', 'Tenorio MC', 'Ogunsanya F', 'Khan AR', 'Lau JC']",2023,7,12,Sci Data,10,1.0,449 37024500,PMC10079825,10.1038/s41597-023-01946-1,Data and Tools Integration in the Canadian Open Neuroscience Platform,"['Poline JB', 'Das S', 'Glatard T', 'Madjar C', 'Dickie EW', 'Lecours X', 'Beaudry T', 'Beck N', 'Behan B', 'Brown ST', 'Bujold D', 'Beauvais M', 'Caron B', 'Czech C', 'Dharsee M', 'Dugre M', 'Evans K', 'Gee T', 'Ippoliti G', 'Kiar G', 'Knoppers BM', 'Kuehn T', 'Le D', 'Lo D', 'Mazaheri M', 'MacFarlane D', 'Muja N', ""O'Brien EA"", ""O'Callaghan L"", 'Paiva S', 'Park P', 'Quesnel D', 'Rabelais H', 'Rioux P', 'Legault M', 'Tremblay-Mercier J', 'Rotenberg D', 'Stone J', 'Strauss T', 'Zaytseva K', 'Zhou J', 'Duchesne S', 'Khan AR', 'Hill S', 'Evans AC']",2023,4,6,Sci Data,10,1.0,189 37000360,,10.1007/s12021-023-09629-3,Funcmasker-flex: An Automated BIDS-App for Brain Segmentation of Human Fetal Functional MRI data,"['Nichols ES', 'Correa S', 'Van Dyken P', 'Kai J', 'Kuehn T', 'de Ribaupierre S', 'Duerden EG', 'Khan AR']",2023,3,31,Neuroinformatics,,, @@ -59,6 +70,7 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages 29116093,PMC5677006,10.1038/s41467-017-01285-x,The challenge of mapping the human connectome based on diffusion tractography,"['Maier-Hein KH', 'Neher PF', 'Houde JC', 'Cote MA', 'Garyfallidis E', 'Zhong J', 'Chamberland M', 'Yeh FC', 'Lin YC', 'Ji Q', 'Reddick WE', 'Glass JO', 'Chen DQ', 'Feng Y', 'Gao C', 'Wu Y', 'Ma J', 'He R', 'Li Q', 'Westin CF', 'Deslauriers-Gauthier S', 'Gonzalez JOO', 'Paquette M', 'St-Jean S', 'Girard G', 'Rheault F', 'Sidhu J', 'Tax CMW', 'Guo F', 'Mesri HY', 'David S', 'Froeling M', 'Heemskerk AM', 'Leemans A', 'Bore A', 'Pinsard B', 'Bedetti C', 'Desrosiers M', 'Brambati S', 'Doyon J', 'Sarica A', 'Vasta R', 'Cerasa A', 'Quattrone A', 'Yeatman J', 'Khan AR', 'Hodges W', 'Alexander S', 'Romascano D', 'Barakovic M', 'Auria A', 'Esteban O', 'Lemkaddem A', 'Thiran JP', 'Cetingul HE', 'Odry BL', 'Mailhe B', 'Nadar MS', 'Pizzagalli F', 'Prasad G', 'Villalon-Reina JE', 'Galvis J', 'Thompson PM', 'Requejo FS', 'Laguna PL', 'Lacerda LM', 'Barrett R', ""Dell'Acqua F"", 'Catani M', 'Petit L', 'Caruyer E', 'Daducci A', 'Dyrby TB', 'Holland-Letz T', 'Hilgetag CC', 'Stieltjes B', 'Descoteaux M']",2017,11,7,Nat Commun,8,1.0,1349 28687122,,10.1016/j.neurad.2017.05.007,Evaluation of ex-vivo 9.4T MRI in post-surgical specimens from temporal lobe epilepsy patients,"['Kwan BYM', 'Salehi F', 'Kope R', 'Lee DH', 'Sharma M', 'Hammond R', 'Burneo JG', 'Steven D', 'Peters T', 'Khan AR']",2017,10,22,J Neuroradiol,44,6.0,377-380 28712912,,10.1016/j.jneumeth.2017.07.006,MultiXplore: Visual exploration platform for multimodal neuroimaging data,"['Bakhshmand SM', 'Khan AR', 'de Ribaupierre S', 'Eagleson R']",2017,10,1,J Neurosci Methods,290,,1-12 +29209582,PMC5711512,10.7759/cureus.1735,White Matter Tracts in Patients with Temporal Lobe Epilepsy: Pre- and Postoperative Assessment,"['Salehi F', 'Sharma M', 'Peters TM', 'Khan AR']",2017,10,1,Cureus,9,10,e1735 28427973,,10.1016/j.wneu.2017.04.043,Ultra-High Field Template-Assisted Target Selection for Deep Brain Stimulation Surgery,"['Lau JC', 'MacDougall KW', 'Arango MF', 'Peters TM', 'Parrent AG', 'Khan AR']",2017,7,22,World Neurosurg,103,,531-537 27564217,,10.1002/jmri.25447,Investigation of hippocampal substructures in focal temporal lobe epilepsy with and without hippocampal sclerosis at 7T,"['Santyr BG', 'Goubran M', 'Lau JC', 'Kwan BYM', 'Salehi F', 'Lee DH', 'Mirsattari SM', 'Burneo JG', 'Steven DA', 'Parrent AG', 'de Ribaupierre S', 'Hammond RR', 'Peters TM', 'Khan AR']",2017,5,22,J Magn Reson Imaging,45,5.0,1359-1370 27653870,,10.1016/j.jns.2016.07.066,Usage of SWI (susceptibility weighted imaging) acquired at 7T for qualitative evaluation of temporal lobe epilepsy patients with histopathological and clinical correlation: An initial pilot study,"['Kwan BYM', 'Salehi F', 'Ohorodnyk P', 'Lee DH', 'Burneo JG', 'Mirsattari SM', 'Steven D', 'Hammond R', 'Peters TM', 'Khan AR']",2016,10,15,J Neurol Sci,369,,82-87 diff --git a/get_publications.ipynb b/get_publications.ipynb index 5d5ae59..6d45ba2 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002403, - "end_time": "2024-06-01T05:12:46.553604", + "duration": 0.002496, + "end_time": "2025-05-01T05:15:55.806044", "exception": false, - "start_time": "2024-06-01T05:12:46.551201", + "start_time": "2025-05-01T05:15:55.803548", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:46.558800Z", - "iopub.status.busy": "2024-06-01T05:12:46.558233Z", - "iopub.status.idle": "2024-06-01T05:12:47.785996Z", - "shell.execute_reply": "2024-06-01T05:12:47.785266Z" + "iopub.execute_input": "2025-05-01T05:15:55.811130Z", + "iopub.status.busy": "2025-05-01T05:15:55.810561Z", + "iopub.status.idle": "2025-05-01T05:15:57.026161Z", + "shell.execute_reply": "2025-05-01T05:15:57.025491Z" }, "papermill": { - "duration": 1.232276, - "end_time": "2024-06-01T05:12:47.787812", + "duration": 1.219941, + "end_time": "2025-05-01T05:15:57.027866", "exception": false, - "start_time": "2024-06-01T05:12:46.555536", + "start_time": "2025-05-01T05:15:55.807925", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001733, - "end_time": "2024-06-01T05:12:47.791557", + "duration": 0.001748, + "end_time": "2025-05-01T05:15:57.031617", "exception": false, - "start_time": "2024-06-01T05:12:47.789824", + "start_time": "2025-05-01T05:15:57.029869", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.796168Z", - "iopub.status.busy": "2024-06-01T05:12:47.795696Z", - "iopub.status.idle": "2024-06-01T05:12:47.802685Z", - "shell.execute_reply": "2024-06-01T05:12:47.802031Z" + "iopub.execute_input": "2025-05-01T05:15:57.036205Z", + "iopub.status.busy": "2025-05-01T05:15:57.035738Z", + "iopub.status.idle": "2025-05-01T05:15:57.042494Z", + "shell.execute_reply": "2025-05-01T05:15:57.041852Z" }, "papermill": { - "duration": 0.011015, - "end_time": "2024-06-01T05:12:47.804184", + "duration": 0.010751, + "end_time": "2025-05-01T05:15:57.044099", "exception": false, - "start_time": "2024-06-01T05:12:47.793169", + "start_time": "2025-05-01T05:15:57.033348", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001644, - "end_time": "2024-06-01T05:12:47.807482", + "duration": 0.001625, + "end_time": "2025-05-01T05:15:57.047359", "exception": false, - "start_time": "2024-06-01T05:12:47.805838", + "start_time": "2025-05-01T05:15:57.045734", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.811879Z", - "iopub.status.busy": "2024-06-01T05:12:47.811531Z", - "iopub.status.idle": "2024-06-01T05:12:47.815022Z", - "shell.execute_reply": "2024-06-01T05:12:47.814307Z" + "iopub.execute_input": "2025-05-01T05:15:57.051696Z", + "iopub.status.busy": "2025-05-01T05:15:57.051333Z", + "iopub.status.idle": "2025-05-01T05:15:57.054978Z", + "shell.execute_reply": "2025-05-01T05:15:57.054290Z" }, "papermill": { - "duration": 0.007234, - "end_time": "2024-06-01T05:12:47.816359", + "duration": 0.007317, + "end_time": "2025-05-01T05:15:57.056324", "exception": false, - "start_time": "2024-06-01T05:12:47.809125", + "start_time": "2025-05-01T05:15:57.049007", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.820796Z", - "iopub.status.busy": "2024-06-01T05:12:47.820442Z", - "iopub.status.idle": "2024-06-01T05:12:50.394770Z", - "shell.execute_reply": "2024-06-01T05:12:50.394051Z" + "iopub.execute_input": "2025-05-01T05:15:57.060924Z", + "iopub.status.busy": "2025-05-01T05:15:57.060522Z", + "iopub.status.idle": "2025-05-01T05:15:59.056589Z", + "shell.execute_reply": "2025-05-01T05:15:59.055942Z" }, "papermill": { - "duration": 2.578186, - "end_time": "2024-06-01T05:12:50.396207", + "duration": 1.999968, + "end_time": "2025-05-01T05:15:59.058031", "exception": false, - "start_time": "2024-06-01T05:12:47.818021", + "start_time": "2025-05-01T05:15:57.058063", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 87\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_1999/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_2152/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.401275Z", - "iopub.status.busy": "2024-06-01T05:12:50.401038Z", - "iopub.status.idle": "2024-06-01T05:12:50.407504Z", - "shell.execute_reply": "2024-06-01T05:12:50.406683Z" + "iopub.execute_input": "2025-05-01T05:15:59.063303Z", + "iopub.status.busy": "2025-05-01T05:15:59.062889Z", + "iopub.status.idle": "2025-05-01T05:15:59.070430Z", + "shell.execute_reply": "2025-05-01T05:15:59.069730Z" }, "papermill": { - "duration": 0.010465, - "end_time": "2024-06-01T05:12:50.408814", + "duration": 0.011942, + "end_time": "2025-05-01T05:15:59.072072", "exception": false, - "start_time": "2024-06-01T05:12:50.398349", + "start_time": "2025-05-01T05:15:59.060130", "status": "completed" }, "tags": [] @@ -294,10 +294,58 @@ "name": "stdout", "output_type": "stream", "text": [ - "71 total articles found.\n", - "0 new articles found.\n", + "83 total articles found.\n", + "12 new articles found.\n", "\n", - "New publications found:\n" + "New publications found:\n", + "Title: Midbrain and pallidal iron changes identify patients with REM sleep behaviour disorder and Parkinson's disease (NPJ Parkinsons Dis)\n", + "Authors: ['Alushaj E', 'Kuurstra A', 'Menon RS', 'Ganjavi H', 'Morava A', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']\n", + "Journal (Date): NPJ Parkinsons Dis (4/23/2025)\n", + "\n", + "Title: Stable White Matter Structure in the First Three Years After Psychosis Onset (Biol Psychiatry Glob Open Sci)\n", + "Authors: ['Van Dyken PC', 'Yang K', 'Faria AV', 'Sawa A', 'MacKinley M', 'Khan AR', 'Palaniyappan L']\n", + "Journal (Date): Biol Psychiatry Glob Open Sci (5/1/2025)\n", + "\n", + "Title: Convergence of Cannabis and Psychosis on the Dopamine System (JAMA Psychiatry)\n", + "Authors: ['Ahrens J', 'Ford SD', 'Schaefer B', 'Reese D', 'Khan AR', 'Tibbo P', 'Rabin R', 'Cassidy CM', 'Palaniyappan L']\n", + "Journal (Date): JAMA Psychiatry (4/9/2025)\n", + "\n", + "Title: Gauge equivariant convolutional neural networks for diffusion MRI (Sci Rep)\n", + "Authors: ['Hussain U', 'Khan AR']\n", + "Journal (Date): Sci Rep (3/20/2025)\n", + "\n", + "Title: Multimodal gradients of basal forebrain connectivity across the neocortex (Nat Commun)\n", + "Authors: ['Chakraborty S', 'Haast RAM', 'Onuska KM', 'Kanel P', 'Prado MAM', 'Prado VF', 'Khan AR', 'Schmitz TW']\n", + "Journal (Date): Nat Commun (10/18/2024)\n", + "\n", + "Title: The developing hippocampus: Microstructural evolution through childhood and adolescence (bioRxiv)\n", + "Authors: ['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']\n", + "Journal (Date): bioRxiv (8/19/2024)\n", + "\n", + "Title: Cortical Network Disruption Is Minimal in Early Stages of Psychosis (Schizophr Bull Open)\n", + "Authors: ['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']\n", + "Journal (Date): Schizophr Bull Open (1/1/2024)\n", + "\n", + "Title: Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease (NPJ Parkinsons Dis)\n", + "Authors: ['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']\n", + "Journal (Date): NPJ Parkinsons Dis (6/29/2024)\n", + "\n", + "Title: Diffusion MRI of the Hippocampus (J Neurosci)\n", + "Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n", + "Journal (Date): J Neurosci (6/5/2024)\n", + "\n", + "Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n", + "Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n", + "Journal (Date): Int J Comput Assist Radiol Surg (7/1/2024)\n", + "\n", + "Title: Novel insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI (bioRxiv)\n", + "Authors: ['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']\n", + "Journal (Date): bioRxiv (7/21/2023)\n", + "\n", + "Title: White Matter Tracts in Patients with Temporal Lobe Epilepsy: Pre- and Postoperative Assessment (Cureus)\n", + "Authors: ['Salehi F', 'Sharma M', 'Peters TM', 'Khan AR']\n", + "Journal (Date): Cureus (10/1/2017)\n", + "\n" ] } ], @@ -323,16 +371,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.413501Z", - "iopub.status.busy": "2024-06-01T05:12:50.413301Z", - "iopub.status.idle": "2024-06-01T05:12:50.427756Z", - "shell.execute_reply": "2024-06-01T05:12:50.427160Z" + "iopub.execute_input": "2025-05-01T05:15:59.077053Z", + "iopub.status.busy": "2025-05-01T05:15:59.076648Z", + "iopub.status.idle": "2025-05-01T05:15:59.097864Z", + "shell.execute_reply": "2025-05-01T05:15:59.097253Z" }, "papermill": { - "duration": 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10.1101/2024.08.19.608590 \n", + "6 39144115 PMC11207789 10.1093/schizbullopen/sgae010 \n", + "7 38951528 PMC11217278 10.1038/s41531-024-00731-0 \n", + "8 38839341 PMC11154849 10.1523/JNEUROSCI.1705-23.2024 \n", + "9 38822981 10.1007/s11548-024-03186-z \n", + "19 37503042 PMC10370151 10.1101/2023.07.19.549533 \n", + "68 29209582 PMC5711512 10.7759/cureus.1735 \n", + "\n", + " title \\\n", + "0 Midbrain and pallidal iron changes identify pa... \n", + "1 Stable White Matter Structure in the First Thr... \n", + "2 Convergence of Cannabis and Psychosis on the D... \n", + "3 Gauge equivariant convolutional neural network... \n", + "4 Multimodal gradients of basal forebrain connec... \n", + "5 The developing hippocampus: Microstructural ev... \n", + "6 Cortical Network Disruption Is Minimal in Earl... \n", + "7 Increased mean diffusivity of the caudal motor... \n", + "8 Diffusion MRI of the Hippocampus \n", + "9 MRI-degad: toward accurate conversion of gadol... \n", + "19 Novel insights into hippocampal perfusion usin... \n", + "68 White Matter Tracts in Patients with Temporal ... \n", + "\n", + " authors year month day \\\n", + "0 [Alushaj E, Kuurstra A, Menon RS, Ganjavi H, M... 2025 4 23 \n", + "1 [Van Dyken PC, Yang K, Faria AV, Sawa A, MacKi... 2025 5 1 \n", + "2 [Ahrens J, Ford SD, Schaefer B, Reese D, Khan ... 2025 4 9 \n", + "3 [Hussain U, Khan AR] 2025 3 20 \n", + "4 [Chakraborty S, Haast RAM, Onuska KM, Kanel P,... 2024 10 18 \n", + "5 [Karat BG, Genc S, Raven EP, Palombo M, Khan A... 2024 8 19 \n", + "6 [Van Dyken PC, MacKinley M, Khan AR, Palaniyap... 2024 1 1 \n", + "7 [Alushaj E, Hemachandra D, Ganjavi H, Seergobi... 2024 6 29 \n", + "8 [Karat BG, Kohler S, Khan AR] 2024 6 5 \n", + "9 [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ... 2024 7 1 \n", + "19 [Haast RAM, Kashyap S, Ivanov D, Yousif MD, De... 2023 7 21 \n", + "68 [Salehi F, Sharma M, Peters TM, Khan AR] 2017 10 1 \n", + "\n", + " journal volume issue pages \n", + "0 NPJ Parkinsons Dis 11 1 84 \n", + "1 Biol Psychiatry Glob Open Sci 5 3 100472 \n", + "2 JAMA Psychiatry \n", + "3 Sci Rep 15 1 9631 \n", + "4 Nat Commun 15 1 8990 \n", + "5 bioRxiv \n", + "6 Schizophr Bull Open 5 1 sgae010 \n", + "7 NPJ Parkinsons Dis 10 1 128 \n", + "8 J Neurosci 44 23 \n", + "9 Int J Comput Assist Radiol Surg 19 7 1469-1472 \n", + "19 bioRxiv \n", + "68 Cureus 9 10 e1735 " ] }, "execution_count": 6, @@ -412,18 +692,18 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.14" + "version": "3.10.17" }, "papermill": { "default_parameters": {}, - "duration": 4.920022, - "end_time": "2024-06-01T05:12:50.648248", + "duration": 4.33284, + "end_time": "2025-05-01T05:15:59.317568", "environment_variables": {}, "exception": null, "input_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "output_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "parameters": {}, - "start_time": 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