@@ -33,25 +33,26 @@ MAINTAINER Stanford Center for Reproducible Neuroscience <crn.poldracklab@gmail.
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RUN ln -snf /bin/bash /bin/sh
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WORKDIR /root
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- RUN mkdir -p ~/examples/ && ln -sf /usr/share/fsl-feeds/ ~/examples/feeds
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- RUN curl -sSL "https://dl.dropbox.com/s/jzgq2nupxyz36bp/nipype-tutorial.tar.bz2" -o nipype-tutorial.tar.bz2 && \
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- tar jxf nipype-tutorial.tar.bz2 -C /root/examples && \
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- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" -o fdt1.tar.gz && \
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- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz" -o fdt2.tar.gz && \
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- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz" -o tbss.tar.gz && \
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- mkdir ~/examples/fsl_course_data && \
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- echo 'Untarring fsl course data...' && \
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- tar zxf fdt1.tar.gz -C ~/examples/fsl_course_data && \
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- tar zxf fdt2.tar.gz -C ~/examples/fsl_course_data && \
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- tar zxf tbss.tar.gz -C ~/examples/fsl_course_data && \
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- echo 'export FSL_COURSE_DATA=/root/examples/fsl_course_data' >> /etc/profile.d/nipype_data.sh
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-
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+ # Install fsl-feeds and the nipype-tutorial data
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ARG DEBIAN_FRONTEND=noninteractive
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RUN apt-get update && \
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apt-get install -y fsl-feeds && \
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- rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
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+ rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* && \
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+ mkdir -p ~/examples/ && \
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+ ln -sf /usr/share/fsl-feeds/ ~/examples/feeds && \
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+ curl -sSL "https://dl.dropbox.com/s/jzgq2nupxyz36bp/nipype-tutorial.tar.bz2" -o nipype-tutorial.tar.bz2 && \
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+ tar jxf nipype-tutorial.tar.bz2 -C /root/examples
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+ # RUN curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" -o fdt1.tar.gz && \
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+ # curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz" -o fdt2.tar.gz && \
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+ # curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz" -o tbss.tar.gz && \
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+ # mkdir ~/examples/fsl_course_data && \
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+ # echo 'Untarring fsl course data...' && \
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+ # tar zxf fdt1.tar.gz -C ~/examples/fsl_course_data && \
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+ # tar zxf fdt2.tar.gz -C ~/examples/fsl_course_data && \
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+ # tar zxf tbss.tar.gz -C ~/examples/fsl_course_data && \
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+ # echo 'export FSL_COURSE_DATA=/root/examples/fsl_course_data' >> /etc/profile.d/nipype_data.sh
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+ # ENV FSL_COURSE_DATA /root/examples/fsl_course_data
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+ # RUN echo 'source /etc/profile.d/nipype_data.sh' >> /etc/bash.bashrc
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- ENV FSL_COURSE_DATA /root/examples/fsl_course_data
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- RUN echo 'source /etc/profile.d/nipype_data.sh' >> /etc/bash.bashrc
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CMD ["/bin/bash" ]
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