From badc8074cd0faa33461dc0f5ee8270217223b267 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Thu, 14 Jul 2022 09:50:00 -0400 Subject: [PATCH 1/4] MNT: Update mailmap --- .mailmap | 1 + 1 file changed, 1 insertion(+) diff --git a/.mailmap b/.mailmap index 6e6ca9a0d6..79ac75ba46 100644 --- a/.mailmap +++ b/.mailmap @@ -75,6 +75,7 @@ Franz Liem Franz Liem Fred Loney Gael Varoquaux +Gal Ben-Zvi Gavin Cooper Ghislain Vaillant Ghislain Vaillant From f12d91555fbba7e7d235e17dc6e927b29aae8c4d Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Thu, 14 Jul 2022 09:52:24 -0400 Subject: [PATCH 2/4] MNT: Update Zenodo --- .zenodo.json | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 5b11234463..44d1aa146d 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -456,6 +456,11 @@ "affiliation": "University of Iowa", "name": "Welch, David" }, + { + "affiliation": "Sagol School of Neuroscience, Tel Aviv University", + "name": "Ben-Zvi, Gal", + "orcid": "0000-0002-5655-9423" + }, { "affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences", "name": "Contier, Oliver", @@ -543,10 +548,6 @@ "name": "Bielievtsov, Dmytro", "orcid": "0000-0003-3846-7696" }, - { - "affiliation": "Sagol School of Neuroscience, Tel Aviv University", - "name": "Ben-Zvi, Gal" - }, { "affiliation": "University of Newcastle, Australia", "name": "Cooper, Gavin", From fd29fd2adb92c34aab0e642940206ab88c6932b1 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Thu, 14 Jul 2022 09:53:42 -0400 Subject: [PATCH 3/4] MNT: JSON is utf-8, do not escape unicode --- .zenodo.json | 30 +++++++++++++++--------------- tools/update_zenodo.py | 2 +- 2 files changed, 16 insertions(+), 16 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 44d1aa146d..f715cad428 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -58,7 +58,7 @@ }, { "affiliation": "Klinikum rechts der Isar, TUM. ACPySS", - "name": "Manh\u00e3es-Savio, Alexandre", + "name": "Manhães-Savio, Alexandre", "orcid": "0000-0002-6608-6885" }, { @@ -127,7 +127,7 @@ }, { "affiliation": "Stanford University", - "name": "\u0106iri\u0107 , Rastko", + "name": "Ćirić , Rastko", "orcid": "0000-0001-6347-7939" }, { @@ -214,7 +214,7 @@ "name": "Tungaraza, Rosalia" }, { - "affiliation": "Charit\u00e8 Universit\u00e4tsmedizin Berlin, Germany", + "affiliation": "Charitè Universitätsmedizin Berlin, Germany", "name": "Dell'Orco, Andrea", "orcid": "0000-0002-3964-8360" }, @@ -277,7 +277,7 @@ }, { "affiliation": "ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.", - "name": "Guillon, Je\u0301re\u0301my", + "name": "Guillon, Jérémy", "orcid": "0000-0002-2672-7510" }, { @@ -314,7 +314,7 @@ "orcid": "0000-0001-9130-1092" }, { - "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany", + "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany", "name": "Bernardoni, Fabio", "orcid": "0000-0002-5112-405X" }, @@ -324,7 +324,7 @@ "orcid": "0000-0002-0805-1350" }, { - "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universit\u00e4t Dresden, Dresden, Germany", + "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany", "name": "Geisler, Daniel", "orcid": "0000-0003-2076-5329" }, @@ -332,7 +332,7 @@ "name": "Salvatore, John" }, { - "affiliation": "CNRS LTCI, Telecom ParisTech, Universit\u00e9 Paris-Saclay", + "affiliation": "CNRS LTCI, Telecom ParisTech, Université Paris-Saclay", "name": "Gramfort, Alexandre", "orcid": "0000-0001-9791-4404" }, @@ -403,7 +403,7 @@ "orcid": "0000-0003-4497-861X" }, { - "name": "Heinsfeld, Anibal S\u00f3lon", + "name": "Heinsfeld, Anibal Sólon", "orcid": "0000-0002-2050-0614" }, { @@ -422,7 +422,7 @@ "name": "Poldrack, Russell" }, { - "affiliation": "1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montr\u00e9al, 3801 University Street, WB-208, H3A 2B4, Qu\u00e9bec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.", + "affiliation": "1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.", "name": "Glatard, Tristan", "orcid": "0000-0003-2620-5883" }, @@ -441,7 +441,7 @@ }, { "affiliation": "University College London", - "name": "P\u00e9rez-Garc\u00eda, Fernando", + "name": "Pérez-García, Fernando", "orcid": "0000-0001-9090-3024" }, { @@ -486,7 +486,7 @@ }, { "affiliation": "Leibniz Institute for Neurobiology", - "name": "Stadler, J\u00f6rg", + "name": "Stadler, Jörg", "orcid": "0000-0003-4313-129X" }, { @@ -563,7 +563,7 @@ }, { "affiliation": "German Institute for International Educational Research", - "name": "Linkersd\u00f6rfer, Janosch", + "name": "Linkersdörfer, Janosch", "orcid": "0000-0002-1577-1233" }, { @@ -577,7 +577,7 @@ "name": "Stanley, Olivia" }, { - "name": "K\u00fcttner, Ren\u00e9" + "name": "Küttner, René" }, { "affiliation": "California Institute of Technology", @@ -730,7 +730,7 @@ "orcid": "0000-0003-2077-3070" }, { - "affiliation": "TIB \u2013 Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany", + "affiliation": "TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany", "name": "Leinweber, Katrin", "orcid": "0000-0001-5135-5758" }, @@ -764,7 +764,7 @@ }, { "affiliation": "Universidad de Guadalajara", - "name": "Gonz\u00e1lez Orozco, Abel A." + "name": "González Orozco, Abel A." }, { "affiliation": "ARAMIS Lab", diff --git a/tools/update_zenodo.py b/tools/update_zenodo.py index e63c2ed2e7..64eb617644 100755 --- a/tools/update_zenodo.py +++ b/tools/update_zenodo.py @@ -69,4 +69,4 @@ def decommify(name): zenodo["creators"] = creators - zenodo_file.write_text("%s\n" % json.dumps(zenodo, indent=2)) + zenodo_file.write_text("%s\n" % json.dumps(zenodo, indent=2, ensure_ascii=False)) From 3ff0d313bd1cee5bf99c6f39eb8f34f0ed2334b6 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Thu, 14 Jul 2022 09:58:21 -0400 Subject: [PATCH 4/4] DOC: 1.8.3 changelog --- doc/changelog/1.X.X-changelog.rst | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/doc/changelog/1.X.X-changelog.rst b/doc/changelog/1.X.X-changelog.rst index a39422a78e..922d06db6f 100644 --- a/doc/changelog/1.X.X-changelog.rst +++ b/doc/changelog/1.X.X-changelog.rst @@ -1,3 +1,21 @@ +1.8.3 (July 14, 2022) +===================== + +Bug-fix release in the 1.8.x series. + +This release includes compatibility fixes for nibabel 4.x and resolves a denial-of-service +bug when the etelemetry server is down that resulted in excessive (blocking) network hits that +would cause any tools using nipype interfaces to take a very long time. + +(`Full changelog `__) + + * FIX: Argument order to ``numpy.save()`` (https://github.com/nipy/nipype/pull/3485) + * FIX: Add tolerance parameter to ComputeDVARS (https://github.com/nipy/nipype/pull/3489) + * FIX: Delay access of nibabel.trackvis until actually needed (https://github.com/nipy/nipype/pull/3488) + * FIX: Avoid excessive etelemetry pings (https://github.com/nipy/nipype/pull/3484) + * ENH: Added outputs' generation to DWIBiascorrect interface (https://github.com/nipy/nipype/pull/3476) + + 1.8.2 (June 06, 2022) =====================