project_structure

markdown_rag/
├── data/                 # Your markdown files go here
├── src/
│   ├── __init__.py
│   ├── ingest.py        # Markdown parsing
│   ├── process.py       # Text cleaning
│   ├── embed.py         # Embedding generation
│   ├── store.py         # Vector storage
│   └── main.py          # Main execution script
├── requirements.txt
└── README.md