From fdab5b042ee08f98f8ab3ce1bc28769b254b7d43 Mon Sep 17 00:00:00 2001 From: arnavaz Date: Fri, 21 Apr 2017 14:57:34 -0400 Subject: [PATCH] Update VisCap.R --- VisCap.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/VisCap.R b/VisCap.R index bd14fa0..79057c9 100644 --- a/VisCap.R +++ b/VisCap.R @@ -97,7 +97,7 @@ make_matrix_from_cov_files <- function(lane_dir, cov_file_pattern, cov_field) { load_interval_names <- function(interval_list_dir, interval_file_pattern) { #Read interval list files and make lookup_table for genome coords and interval names lookup = c() - filenames = list.files(interval_list_dir, full.names=TRUE, pattern=interval_file_pattern, recursive=TRUE) + filenames = list.files(interval_list_dir, full.names=TRUE, pattern=interval_file_pattern, recursive=FALSE) for(file in filenames) { tab = read.table(file, header=FALSE, comment.char = "@", stringsAsFactors=FALSE) colnames(tab) <- c("chr", "start", "end", "strand", "interval_name")