Merge pull request #344 from hyanwong/remove-extra-provenance-extracting

mergify[bot] · web-flow · commit f1d1cd184658 · 2020-10-23T15:12:29.000Z
Allow provenance tests to pass again
diff --git a/tsinfer/eval_util.py b/tsinfer/eval_util.py
@@ -572,7 +572,11 @@ def extract_ancestors(samples, ts):
     )
     # Now simplify down the tables to get rid of all sample edges.
     node_id_map = tables.simplify(
-        samples, filter_sites=False, filter_individuals=True, filter_populations=False
+        samples,
+        filter_sites=False,
+        filter_individuals=True,
+        filter_populations=False,
+        record_provenance=False,
     )
 
     # We cannot have flags that are both samples and have other flags set,

Original file line number	Diff line number	Diff line change
`@@ -572,7 +572,11 @@ def extract_ancestors(samples, ts):`
`572`	`572`	`)`
`573`	`573`	`# Now simplify down the tables to get rid of all sample edges.`
`574`	`574`	`node_id_map = tables.simplify(`
`575`		`- samples, filter_sites=False, filter_individuals=True, filter_populations=False`
	`575`	`+ samples,`
	`576`	`+ filter_sites=False,`
	`577`	`+ filter_individuals=True,`
	`578`	`+ filter_populations=False,`
	`579`	`+ record_provenance=False,`
`576`	`580`	`)`
`577`	`581`
`578`	`582`	`# We cannot have flags that are both samples and have other flags set,`