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‎LICENSE

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The MIT License (MIT)
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Copyright (c) 2013-2019 Blackrock Digital LLC
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in
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all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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THE SOFTWARE.

‎README.md

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‎css/scrolling-nav.css

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/*!
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* Start Bootstrap - Scrolling Nav (https://startbootstrap.com/template-overviews/scrolling-nav)
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* Copyright 2013-2019 Start Bootstrap
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* Licensed under MIT (https://github.com/BlackrockDigital/startbootstrap-scrolling-nav/blob/master/LICENSE)
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*/
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header {
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padding: 100px 0 44px;
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}
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section {
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padding: 40px 0;
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}

‎ex.html

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<!DOCTYPE html>
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<html>
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<head>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<style>
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* {box-sizing: border-box}
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body {font-family: Verdana, sans-serif; margin:0}
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.mySlides {display: none}
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img {vertical-align: middle;}
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/* Slideshow container */
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.slideshow-xcontainer {
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max-width: 1000px;
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position: relative;
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margin: auto;
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}
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/* Next & previous buttons */
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.prev, .next {
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cursor: pointer;
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position: absolute;
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top: 50%;
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width: auto;
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padding: 16px;
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margin-top: -22px;
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color: white;
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font-weight: bold;
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font-size: 18px;
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transition: 0.6s ease;
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border-radius: 0 3px 3px 0;
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user-select: none;
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}
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/* Position the "next button" to the right */
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.next {
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right: 0;
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border-radius: 3px 0 0 3px;
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}
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/* On hover, add a black background color with a little bit see-through */
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.prev:hover, .next:hover {
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background-color: rgba(0,0,0,0.8);
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}
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/* Caption text */
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.text {
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color: #f2f2f2;
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font-size: 15px;
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padding: 8px 12px;
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position: absolute;
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bottom: 8px;
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width: 100%;
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text-align: center;
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}
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/* Number text (1/3 etc) */
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.numbertext {
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color: #f2f2f2;
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font-size: 12px;
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padding: 8px 12px;
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position: absolute;
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top: 0;
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}
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/* The dots/bullets/indicators */
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.dot {
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cursor: pointer;
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height: 15px;
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width: 15px;
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margin: 0 2px;
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background-color: #bbb;
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border-radius: 50%;
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display: inline-block;
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transition: background-color 0.6s ease;
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}
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.active, .dot:hover {
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background-color: #717171;
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}
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/* Fading animation */
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.fade {
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-webkit-animation-name: fade;
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-webkit-animation-duration: 1.5s;
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animation-name: fade;
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animation-duration: 1.5s;
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}
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@-webkit-keyframes fade {
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from {opacity: .4}
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to {opacity: 1}
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}
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@keyframes fade {
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from {opacity: .4}
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to {opacity: 1}
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}
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/* On smaller screens, decrease text size */
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@media only screen and (max-width: 300px) {
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.prev, .next,.text {font-size: 11px}
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}
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</style>
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</head>
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<body>
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<div class="slideshow-xcontainer">
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<div class="mySlides fade">
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<div class="numbertext">1 / 3</div>
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<img src="img/tools2.jpg" style="width:100%">
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<div class="text">Caption Text</div>
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</div>
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<div class="mySlides fade">
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<div class="numbertext">2 / 3</div>
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<img src="img/tools2.jpg" style="width:100%">
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<div class="text">Caption Two</div>
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</div>
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<div class="mySlides fade">
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<div class="numbertext">3 / 3</div>
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<img src="img/tools2.jpg" style="width:100%">
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<div class="text">Caption Three</div>
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</div>
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<a class="prev" onclick="plusSlides(-1)">&#10094;</a>
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<a class="next" onclick="plusSlides(1)">&#10095;</a>
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</div>
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<br>
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<div style="text-align:center">
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<span class="dot" onclick="currentSlide(1)"></span>
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<span class="dot" onclick="currentSlide(2)"></span>
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<span class="dot" onclick="currentSlide(3)"></span>
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</div>
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<script>
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var slideIndex = 1;
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showSlides(slideIndex);
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function plusSlides(n) {
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showSlides(slideIndex += n);
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}
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function currentSlide(n) {
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showSlides(slideIndex = n);
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}
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function showSlides(n) {
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var i;
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var slides = document.getElementsByClassName("mySlides");
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var dots = document.getElementsByClassName("dot");
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if (n > slides.length) {slideIndex = 1}
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if (n < 1) {slideIndex = slides.length}
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for (i = 0; i < slides.length; i++) {
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slides[i].style.display = "none";
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}
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for (i = 0; i < dots.length; i++) {
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dots[i].className = dots[i].className.replace(" active", "");
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}
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slides[slideIndex-1].style.display = "block";
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dots[slideIndex-1].className += " active";
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}
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</script>
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</body>
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</html>
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‎gulpfile.js

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"use strict";
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// Load plugins
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const browsersync = require("browser-sync").create();
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const del = require("del");
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const gulp = require("gulp");
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const merge = require("merge-stream");
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// BrowserSync
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function browserSync(done) {
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browsersync.init({
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server: {
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baseDir: "./"
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},
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port: 3000
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});
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done();
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}
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// BrowserSync reload
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function browserSyncReload(done) {
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browsersync.reload();
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done();
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}
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// Clean vendor
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function clean() {
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return del(["./vendor/"]);
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}
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// Bring third party dependencies from node_modules into vendor directory
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function modules() {
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// Bootstrap
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var bootstrap = gulp.src('./node_modules/bootstrap/dist/**/*')
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.pipe(gulp.dest('./vendor/bootstrap'));
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// jQuery
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var jquery = gulp.src([
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'./node_modules/jquery/dist/*',
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'!./node_modules/jquery/dist/core.js'
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])
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.pipe(gulp.dest('./vendor/jquery'));
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// jQuery Easing
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var jqueryEasing = gulp.src('./node_modules/jquery.easing/*.js')
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.pipe(gulp.dest('./vendor/jquery-easing'));
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return merge(bootstrap, jquery, jqueryEasing);
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}
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// Watch files
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function watchFiles() {
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gulp.watch("./**/*.css", browserSyncReload);
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gulp.watch("./**/*.html", browserSyncReload);
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}
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// Define complex tasks
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const vendor = gulp.series(clean, modules);
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const build = gulp.series(vendor);
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const watch = gulp.series(build, gulp.parallel(watchFiles, browserSync));
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// Export tasks
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exports.clean = clean;
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exports.vendor = vendor;
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exports.build = build;
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exports.watch = watch;
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exports.default = build;

‎img/exon1.jpg

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‎img/exon2.jpg

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‎img/exon4.jpg

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‎img/exon5.jpg

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‎img/tools2.jpg

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‎imgs/1200px-University_of_Helsinki.svg

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‎imgs/AL.jpg

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‎imgs/AP.png

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‎imgs/AVR.png

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‎imgs/TITLES.txt

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EFFICIENT DNA SEQUENCE COMPRESSION WITH NEURAL NETWORKS
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THE LANDSCAPE OF PERSISTENT HUMAN DNA VIRUSES IN FEMORAL BONE
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A HYBRID PIPELINE FOR RECONSTRUCTION AND ANALYSIS OF VIRAL GENOMES AT MULTI-ORGAN LEVEL
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PERSISTENT MINIMAL SEQUENCES OF SARS-COV-2
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GTO: A TOOLKIT TO UNIFY PIPELINES IN GENOMIC AND PROTEOMIC RESEARCH
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SMASH++: AN ALIGNMENT-FREE AND MEMORY-EFFICIENT TOOL TO FIND GENOMIC REARRANGEMENTS
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STATISTICAL COMPLEXITY ANALYSIS OF TURING MACHINE TAPES WITH FIXED ALGORITHMIC COMPLEXITY USING THE BEST-ORDER MARKOV MODEL
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A REFERENCE-FREE LOSSLESS COMPRESSION ALGORITHM FOR DNA SEQUENCES USING A COMPETITIVE PREDICTION OF TWO CLASSES OF WEIGHTED MODELS
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A PROBABILISTIC METHOD TO FIND AND VISUALIZE DISTINCT REGIONS IN PROTEIN SEQUENCES
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VISUALIZATION OF SIMILAR PRIMER AND ADAPTER SEQUENCES IN ASSEMBLED ARCHAEAL GENOMES
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GECO2: AN OPTIMIZED TOOL FOR LOSSLESS COMPRESSION AND ANALYSIS OF DNA SEQUENCES
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AC: A COMPRESSION TOOL FOR AMINO ACID SEQUENCES
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CRYFA: A SECURE ENCRYPTION TOOL FOR GENOMIC DATA
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AN APPLICATION OF DATA COMPRESSION MODELS TO HANDWRITTEN DIGIT CLASSIFICATION
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METAGENOMIC COMPOSITION ANALYSIS OF AN ANCIENT SEQUENCED POLAR BEAR JAWBONE FROM SVALBARD
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METAGENOMIC COMPOSITION ANALYSIS OF SEDIMENTARY ANCIENT DNA FROM THE ISLE OF WIGHT
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EXTENDED-ALPHABET FINITE-CONTEXT MODELS
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COMPARISON OF COMPRESSION-BASED MEASURES WITH APPLICATION TO THE EVOLUTION OF PRIMATE GENOMES
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NET-ASAR: A TOOL FOR DNA SEQUENCE SEARCH BASED ON DATA COMPRESSION
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COMPRESSION OF AMINO ACID SEQUENCES
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A DNA SEQUENCE CORPUS FOR COMPRESSION BENCHMARK
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FALCON-META: A METHOD TO INFER METAGENOMIC COMPOSITION OF ANCIENT DNA
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CRYFA: A TOOL TO COMPACT AND ENCRYPT FASTA FILES
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SUBSTITUTIONAL TOLERANT MARKOV MODELS FOR RELATIVE COMPRESSION OF DNA SEQUENCES
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ON THE ROLE OF INVERTED REPEATS IN DNA SEQUENCE SIMILARITY
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ON THE APPROXIMATION OF THE KOLMOGOROV COMPLEXITY FOR DNA SEQUENCES
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VISUALIZATION OF DISTINCT DNA REGIONS OF THE MODERN HUMAN RELATIVELY TO A NEANDERTHAL GENOME
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ALGORITHMS FOR COMPUTATIONAL BIOLOGY
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A SURVEY ON DATA COMPRESSION METHODS FOR BIOLOGICAL SEQUENCES
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AUTHORSHIP ATTRIBUTION USING RELATIVE COMPRESSION
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EFFICIENT COMPRESSION OF GENOMIC SEQUENCES
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COMPRESSION AND ANALYSIS OF GENOMIC DATA
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AN ALIGNMENT-FREE METHOD TO FIND AND VISUALISE REARRANGEMENTS BETWEEN PAIRS OF DNA SEQUENCES
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THREE MINIMAL SEQUENCES FOUND IN EBOLA VIRUS GENOMES AND ABSENT FROM HUMAN DNA
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MAFCO: A COMPRESSION TOOL FOR MAF FILES
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TOWARDS NOVEL THERANOSTICS FOR EBOLA VIRUS: EXPLORING GENOMIC RELATIVE ABSENT WORDS
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DETECTION AND VISUALISATION OF REGIONS OF HUMAN DNA NOT PRESENT IN OTHER PRIMATES
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XS: A FASTQ READ SIMULATOR
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A NEW COMPRESSOR FOR MEASURING DISTANCES AMONG IMAGES
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EXPLORING DEEP MARKOV MODELS IN GENOMIC DATA COMPRESSION USING SEQUENCE PRE-ANALYSIS
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INFORMATION PROFILES FOR DNA PATTERN DISCOVERY
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A CONDITIONAL COMPRESSION DISTANCE THAT UNVEILS INSIGHTS OF THE GENOMIC EVOLUTION
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MFCOMPRESS: A COMPRESSION TOOL FOR FASTA AND MULTI-FASTA DATA
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DNA SEQUENCES AT A GLANCE
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A GENOMIC DISTANCE FOR ASSEMBLY COMPARISON BASED ON COMPRESSED MAXIMAL EXACT MATCHES
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A COMPRESSION MODEL FOR DNA MULTIPLE SEQUENCE ALIGNMENT BLOCKS
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COMPRESSING RESEQUENCING DATA WITH GREEN
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COMPRESSION OF WHOLE GENOME ALIGNMENTS USING A MIXTURE OF FINITE-CONTEXT MODELS
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ON THE DETECTION OF UNKNOWN LOCALLY REPEATING PATTERNS IN IMAGES
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GREEN: A TOOL FOR EFFICIENT COMPRESSION OF GENOME RESEQUENCING DATA
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M6: A METHOD FOR COMPRESSING COMPLETE GENOMES USING MARKOV MODELS
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EXON: A WEB-BASED SOFTWARE TOOLKIT FOR DNA SEQUENCE ANALYSIS
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COMPUTATION OF THE NORMALIZED COMPRESSION DISTANCE OF DNA SEQUENCES USING A MIXTURE OF FINITE-CONTEXT MODELS.
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COMPLEXITY PROFILES OF DNA SEQUENCES USING FINITE-CONTEXT MODELS
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SYMBOLIC TO NUMERICAL CONVERSION OF DNA SEQUENCES USING FINITE-CONTEXT MODELS
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DNA SYNTHETIC SEQUENCES GENERATION USING MULTIPLE COMPETING MARKOV MODELS
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BACTERIA DNA SEQUENCE COMPRESSION USING A MIXTURE OF FINITE-CONTEXT MODELS
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COMPRESSING THE HUMAN GENOME USING EXCLUSIVELY MARKOV MODELS
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DNA SYNTHETIC SEQUENCES GENERATED BY FINITE-CONTEXT MODELS
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IMPROVING THE DETECTION OF MTDNA REARRANGEMENTS USING A FAST AND ACCURATE ALGORITHM
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EVOLUTIONARY INSIGHTS FROM THE COMPARATIVE ANALYSIS OF HOMINID GENOMES
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IDENTIFICATION OF ANTIFUNGAL TARGETS USING ALIGNMENT-FREE METHODS
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TOWARDS PERSONALIZED MEDICINE: EBOLA VIRUS ABSENT WORDS IN THE HUMAN GENOME
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LARGE-SCALE INVERSIONS BETWEEN HUMAN REFERENCE ASSEMBLIES
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INSIGHTS INTO PRIMATES GENOMIC EVOLUTION USING A COMPRESSION DISTANCE
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ON THE COMPRESSION OF FASTQ QUALITY-SCORES
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ANALYSIS OF PATTERNS IN S. POMBE GENOME THROUGH COMPRESSION-BASED COMPLEXITY PROFILES
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ANALYSIS OF DNA SEQUENCES USING FINITE-CONTEXT MODELLING AND COMPRESSION
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