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The specific protocol for EpiProfile software installation and usage #1
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Please follow the instructions below for the updated program usage. Thanks. |
please assist these errors... (I used EpiProfile2.1_1Basic) LC-MS_Liver_rep1 Error using horzcat Error in get_nDAmode (line 60) Error in EpiProfile_test (line 79) |
Hi,
Thanks for your test. Could you please share a link for me to download
these three RAW files?
Best,
Zuofei
…On Sun, Sep 27, 2020 at 10:54 PM clin888 ***@***.***> wrote:
please assist these errors... (I used EpiProfile2.1_1Basic)
Thank you so much..
LC-MS_Liver_rep1
LC-MS_Liver_rep2
LC-MS_Liver_rep3
Error using horzcat
Dimensions of arrays being concatenated are not consistent.
Error in get_nDAmode (line 60)
cur_ix = [0 cur_ix cycle_len];%#ok
Error in EpiProfile_test (line 79)
[nDAmodes,windows] = get_nDAmode(raw_path,raw_names,startmz);
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Hi Zuo-Fei,
I appreciate your quick response...
Here is the URL for the data (18 raw files)
https://chorusproject.org/pages/dashboard.html#/search/1546/projects/1546/experiments/3356/files?page=1&items=25&sortingField=uploadDate&asc=false
In case, you have a problem downloading this. attached is the paper.
https://genome.cshlp.org/content/29/6/978.long
[cid:49aff953-b9fa-437c-859f-6f27bc8e0e7e]
Thank you so much,
Chenwei
________________________________
From: Zuo-Fei Yuan <[email protected]>
Sent: Monday, September 28, 2020 7:09 PM
To: zfyuan/EpiProfile2.0_Family <[email protected]>
Cc: Lin PhD, ChenWei <[email protected]>; Comment <[email protected]>
Subject: Re: [zfyuan/EpiProfile2.0_Family] The specific protocol for EpiProfile software installation and usage (#1)
Hi,
Thanks for your test. Could you please share a link for me to download
these three RAW files?
Best,
Zuofei
On Sun, Sep 27, 2020 at 10:54 PM clin888 ***@***.***> wrote:
please assist these errors... (I used EpiProfile2.1_1Basic)
Thank you so much..
LC-MS_Liver_rep1
LC-MS_Liver_rep2
LC-MS_Liver_rep3
Error using horzcat
Dimensions of arrays being concatenated are not consistent.
Error in get_nDAmode (line 60)
cur_ix = [0 cur_ix cycle_len];%#ok
Error in EpiProfile_test (line 79)
[nDAmodes,windows] = get_nDAmode(raw_path,raw_names,startmz);
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Thanks for the link. I will test the data these days.
Best,
Zuo-Fei
…On Tue, Sep 29, 2020 at 12:27 AM clin888 ***@***.***> wrote:
Hi Zuo-Fei,
I appreciate your quick response...
Here is the URL for the data (18 raw files)
https://chorusproject.org/pages/dashboard.html#/search/1546/projects/1546/experiments/3356/files?page=1&items=25&sortingField=uploadDate&asc=false
In case, you have a problem downloading this. attached is the paper.
https://genome.cshlp.org/content/29/6/978.long
[cid:49aff953-b9fa-437c-859f-6f27bc8e0e7e]
Thank you so much,
Chenwei
________________________________
From: Zuo-Fei Yuan ***@***.***>
Sent: Monday, September 28, 2020 7:09 PM
To: zfyuan/EpiProfile2.0_Family ***@***.***>
Cc: Lin PhD, ChenWei ***@***.***>; Comment <
***@***.***>
Subject: Re: [zfyuan/EpiProfile2.0_Family] The specific protocol for
EpiProfile software installation and usage (#1)
Hi,
Thanks for your test. Could you please share a link for me to download
these three RAW files?
Best,
Zuofei
On Sun, Sep 27, 2020 at 10:54 PM clin888 ***@***.***> wrote:
> please assist these errors... (I used EpiProfile2.1_1Basic)
> Thank you so much..
>
> LC-MS_Liver_rep1
> LC-MS_Liver_rep2
> LC-MS_Liver_rep3
>
> Error using horzcat
> Dimensions of arrays being concatenated are not consistent.
>
> Error in get_nDAmode (line 60)
> cur_ix = [0 cur_ix cycle_len];%#ok
>
> Error in EpiProfile_test (line 79)
> [nDAmodes,windows] = get_nDAmode(raw_path,raw_names,startmz);
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
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I see what is the issue.
DI-MS_Liver_Wideisolation_rep1
DI-MS_Liver_Wideisolation_rep2
DI-MS_Liver_Wideisolation_rep3
LC-MS_Brain_rep1
LC-MS_Brain_rep2
LC-MS_Brain_rep3
LC-MS_Liver_rep1
LC-MS_Liver_rep2
LC-MS_Liver_rep3
Error using horzcat
Dimensions of arrays being concatenated are not consistent.
The files starting with 'DI' are very small. The files starting with 'LC'
are very big.
EpiProfile2.1_1Basic can only process the 'LC' files. EpiProfileLite (
https://github.com/zfyuan/EpiProfileLite) can process the 'DI' files.
So please separate those files first.
Best,
Zuo-Fei
…On Tue, Sep 29, 2020 at 12:27 AM clin888 ***@***.***> wrote:
Hi Zuo-Fei,
I appreciate your quick response...
Here is the URL for the data (18 raw files)
https://chorusproject.org/pages/dashboard.html#/search/1546/projects/1546/experiments/3356/files?page=1&items=25&sortingField=uploadDate&asc=false
In case, you have a problem downloading this. attached is the paper.
https://genome.cshlp.org/content/29/6/978.long
[cid:49aff953-b9fa-437c-859f-6f27bc8e0e7e]
Thank you so much,
Chenwei
________________________________
From: Zuo-Fei Yuan ***@***.***>
Sent: Monday, September 28, 2020 7:09 PM
To: zfyuan/EpiProfile2.0_Family ***@***.***>
Cc: Lin PhD, ChenWei ***@***.***>; Comment <
***@***.***>
Subject: Re: [zfyuan/EpiProfile2.0_Family] The specific protocol for
EpiProfile software installation and usage (#1)
Hi,
Thanks for your test. Could you please share a link for me to download
these three RAW files?
Best,
Zuofei
On Sun, Sep 27, 2020 at 10:54 PM clin888 ***@***.***> wrote:
> please assist these errors... (I used EpiProfile2.1_1Basic)
> Thank you so much..
>
> LC-MS_Liver_rep1
> LC-MS_Liver_rep2
> LC-MS_Liver_rep3
>
> Error using horzcat
> Dimensions of arrays being concatenated are not consistent.
>
> Error in get_nDAmode (line 60)
> cur_ix = [0 cur_ix cycle_len];%#ok
>
> Error in EpiProfile_test (line 79)
> [nDAmodes,windows] = get_nDAmode(raw_path,raw_names,startmz);
>
> —
> You are receiving this because you commented.
> Reply to this email directly, view it on GitHub
> <
#1 (comment)
><
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I have tried to download the EpiProfile software on the website for several times in order to identify and make quantification of histone modification during experiment, but failed every time. Hence, I want to make aquisition of the method for EpiProfile software download, so as to make analysis of histone modification on my own. Thank you very much!
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