v0.2.0

README.md

@@ -35,16 +35,19 @@ Then go into Plugins > napari-cellseg3d, and choose which tool to use.
 - **Review (label)**: This module allows you to review your labels, from predictions or manual labeling, and correct them if needed. It then saves the status of each file in a csv, for easier monitoring.
 - **Inference**: This module allows you to use pre-trained segmentation algorithms on volumes to automatically label cells and compute statistics.
 - **Train**:  This module allows you to train segmentation algorithms from labeled volumes.
-- **Utilities**: This module allows you to perform several actions like cropping your volumes and labels dynamically, by selecting a fixed size volume and moving it around the image; computing prediction scores from ground truth and predicition labels; or converting labels from instance to segmentation and the opposite.
+- **Utilities**: This module allows you to perform several actions like cropping your volumes and labels dynamically, by selecting a fixed size volume and moving it around the image; fragment images into smaller cubes for training; or converting labels from instance to segmentation and the opposite.
 
 ## News
 
-**New version : v0.1.2**
+**New version : v0.2.0**
 
-- Fixed manifest issue for PyPi
+- Changed project name to "napari_cellseg3d" to avoid setuptools deprecation
+- Small API changes for training/inference from a script
+- Some fixes to WandB integration ad csv saving after training
 
 Previous additions :
 
+- v0.1.2 :Fixed manifest issue for PyPi
 - Improved training interface
 - Unsupervised model : WNet3D
   - Generate labels directly from raw data!

napari_cellseg3d/__init__.py

@@ -1,2 +1,2 @@
 """napari-cellseg3d - napari plugin for cell segmentation."""
-__version__ = "0.1.2"
+__version__ = "0.2.0"

napari_cellseg3d/code_plugins/plugin_helper.py

@@ -43,7 +43,7 @@ def __init__(self, viewer: "napari.viewer.Viewer"):
         self.logo_label.setToolTip("Open Github page")
 
         self.info_label = ui.make_label(
-            f"You are using napari-cellseg3d v.{'0.1.2'}\n\n"
+            f"You are using napari-cellseg3d v.{'0.2.0'}\n\n"
             f"Plugin for cell segmentation developed\n"
             f"by the Mathis Lab of Adaptive Motor Control\n\n"
             f"Code by :\nCyril Achard\nMaxime Vidal\nJessy Lauer\nMackenzie Mathis\n"

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = napari_cellseg3d
-version = 0.1.2
+version = 0.2.0
 
 [options]
 packages = find: