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Covert Lab

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Shriram Center, Stanford University, Stanford CA 94305
http://covert.stanford.edu

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WholeCellEcoliRelease WholeCellEcoliRelease Public

Release of the whole cell E. coli model.

Python 66 16

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Showing 10 of 31 repositories

vEcoli Public
Whole cell model of E. coli implemented with Vivarium

CovertLab/vEcoli’s past year of commit activity

Jupyter Notebook 18 MIT 9 6 3 Updated Jun 6, 2025
wcEcoli Public
Whole Cell Model of E. coli

CovertLab/wcEcoli’s past year of commit activity

Python 23 8 150 3 Updated Jun 6, 2025
orjson Public Forked from ijl/orjson
Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

CovertLab/orjson’s past year of commit activity

Python 0 Apache-2.0 250 0 0 Updated Apr 4, 2025
BIOE101-Online-Companion Public
This repository is an online companion to BIOE101/210: Systems Biology, providing code and resources to support the textbook.

CovertLab/BIOE101-Online-Companion’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Feb 10, 2025
arrow Public
Stochastic simulations in python

CovertLab/arrow’s past year of commit activity

Python 3 MIT 1 17 1 Updated Dec 12, 2024
WholeCellEcoliRelease Public
Release of the whole cell E. coli model.

CovertLab/WholeCellEcoliRelease’s past year of commit activity

Python 66 16 1 6 Updated Dec 10, 2024
short-gene-alignment Public

CovertLab/short-gene-alignment’s past year of commit activity

Python 0 0 0 0 Updated Feb 28, 2024
Rend-seq-plots Public

CovertLab/Rend-seq-plots’s past year of commit activity

Jupyter Notebook 0 1 0 0 Updated Feb 28, 2024
borealis Public
Run FireWorks workflows in Google Cloud.

CovertLab/borealis’s past year of commit activity

Python 4 MIT 1 1 3 Updated Jun 6, 2023
wcecoli-colony-analysis Public
Code and analysis for the "Whole-Colony Modeling of Escherichia coli" that is currently in preparation.

CovertLab/wcecoli-colony-analysis’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Aug 23, 2022

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