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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 25 13

Repositories

Showing 10 of 277 repositories
  • mcp_docs Public

    Documentation for Model Context Protocol (MCP) suitable for in-context learning

    JaneliaSciComp/mcp_docs’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Apr 8, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 0 0 Updated Apr 8, 2025
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Apr 8, 2025
  • nf-bigstitcher Public
    JaneliaSciComp/nf-bigstitcher’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Apr 8, 2025
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Apr 8, 2025
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 25 BSD-2-Clause 13 15 1 Updated Apr 8, 2025
  • FunkeAnnotation Public

    Small tool to annotate images

    JaneliaSciComp/FunkeAnnotation’s past year of commit activity
    Java 1 0 1 0 Updated Apr 8, 2025
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 3 MIT 0 0 40 Updated Apr 8, 2025
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 24 BSD-3-Clause 6 5 1 Updated Apr 7, 2025
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 23 BSD-3-Clause 3 6 1 Updated Apr 7, 2025
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