Add a new widget to show the units topological distribution on the probe

pyproject.toml

@@ -108,6 +108,7 @@ widgets = [
     "matplotlib",
     "ipympl",
     "ipywidgets",
+    "seaborn>=0.13.0",
     "sortingview>=0.12.0",
 ]
 

src/spikeinterface/widgets/unit_spatial.py

@@ -0,0 +1,150 @@
+from __future__ import annotations
+
+import numpy as np
+from probeinterface import Probe
+from warnings import warn
+from .base import BaseWidget, to_attr
+
+
+class UnitSpatialDistributionsWidget(BaseWidget):
+    """
+    Placeholder documentation to be changed.
+
+    Parameters
+    ----------
+    sorting_analyzer : SortingAnalyzer
+        The SortingAnalyzer object
+    depth_axis : int, default: 1
+        The dimension of unit_locations that is depth
+    """
+
+    def __init__(
+        self,
+        sorting_analyzer,
+        probe=None,
+        depth_axis=1,
+        bins=None,
+        cmap="viridis",
+        kde=False,
+        depth_hist=True,
+        groups=None,
+        kde_kws=None,
+        backend=None,
+        **backend_kwargs,
+    ):
+        sorting_analyzer = self.ensure_sorting_analyzer(sorting_analyzer)
+
+        self.check_extensions(sorting_analyzer, "unit_locations")
+        ulc = sorting_analyzer.get_extension("unit_locations")
+        unit_locations = ulc.get_data(outputs="numpy")
+        x, y = unit_locations[:, 0], unit_locations[:, 1]
+
+        if type(probe) is Probe:
+            if sorting_analyzer.recording.has_probe():
+                warn(
+                    "There is a Probe attached to this recording, but the probe argument is not None: the attached Probe will be ignored."
+                )
+        elif sorting_analyzer.recording.has_probe():
+            probe = sorting_analyzer.get_probe()
+        else:
+            raise ValueError(
+                "There is no Probe attached to this recording. Use set_probe(...) to attach one or pass it to the function via the probe argument."
+            )
+
+        # xrange, yrange, _ = get_auto_lims(probe, margin=0)
+        # if bins is None:
+        #     bins = (
+        #         np.round(np.diff(xrange).squeeze() / 75).astype(int),
+        #         np.round(np.diff(yrange).squeeze() / 75).astype(int),
+        #     )
+        #     # TODO: change behaviour, if bins is not defined, bin only along the depth axis
+
+        plot_data = dict(
+            probe=probe,
+            x=x,
+            y=y,
+            depth_axis=depth_axis,
+            bins=bins,
+            kde=kde,
+            cmap=cmap,
+            depth_hist=depth_hist,
+            groups=groups,
+            kde_kws=kde_kws,
+        )
+
+        BaseWidget.__init__(self, plot_data, backend=backend, **backend_kwargs)
+
+    def plot_matplotlib(self, data_plot, **backend_kwargs):
+        import matplotlib.patches as patches
+        import matplotlib.path as path
+        from probeinterface.plotting import get_auto_lims
+        from seaborn import color_palette, kdeplot, histplot
+        from .utils_matplotlib import make_mpl_figure
+
+        dp = to_attr(data_plot)
+        xrange, yrange, _ = get_auto_lims(dp.probe, margin=0)
+        cmap = color_palette(dp.cmap, as_cmap=True) if type(dp.cmap) is str else dp.cmap
+
+        self.figure, self.axes, self.ax = make_mpl_figure(**backend_kwargs)
+
+        ax = self.ax
+
+        custom_shape = path.Path(dp.probe.probe_planar_contour)
+        patch = patches.PathPatch(custom_shape, facecolor="none", edgecolor="none")
+        ax.add_patch(patch)
+
+        if dp.kde is not True:
+            hist, xedges, yedges = np.histogram2d(dp.x, dp.y, bins=dp.bins, range=[xrange, yrange])
+            pcm = ax.pcolormesh(xedges, yedges, hist.T, cmap=cmap)
+        else:
+            kde_kws = dict(levels=100, thresh=0, fill=True, bw_adjust=0.1)
+            if dp.kde_kws is not None:
+                kde_kws.update(dp.kde_kws)
+            data = dict(x=dp.x, y=dp.y)
+            bg = ax.add_patch(
+                patches.Rectangle(
+                    [xrange[0], yrange[0]],
+                    np.diff(xrange).squeeze(),
+                    np.diff(yrange).squeeze(),
+                    facecolor=cmap.colors[0],
+                    fill=True,
+                )
+            )
+            bg.set_clip_path(patch)
+            kdeplot(data, x="x", y="y", clip=[xrange, yrange], cmap=cmap, ax=ax, **kde_kws)
+            pcm = ax.collections[0]
+            ax.set_xlabel(None)
+            ax.set_ylabel(None)
+
+        pcm.set_clip_path(patch)
+
+        xlim, ylim, _ = get_auto_lims(dp.probe, margin=10)
+        ax.set_xlim(*xlim)
+        ax.set_ylim(*ylim)
+        ax.spines["top"].set_visible(False)
+        ax.spines["bottom"].set_visible(False)
+        ax.spines["right"].set_visible(False)
+        ax.set_xticks([])
+        ax.set_xlabel("")
+        ax.set_ylabel("Depth (um)")
+
+        if dp.depth_hist is True:
+            bbox = ax.get_window_extent()
+            hist_height = 1.5 * bbox.width
+
+            ax_hist = ax.inset_axes([1, 0, hist_height / bbox.width, 1])
+            data = dict(y=dp.y)
+            data["group"] = np.ones(dp.y.size) if dp.groups is None else dp.groups
+            palette = color_palette("bright", n_colors=1 if dp.groups is None else np.unique(dp.groups).size)
+            histplot(
+                data=data,
+                y="y",
+                hue="group",
+                bins=dp.bins[1],
+                binrange=yrange,
+                palette=palette,
+                ax=ax_hist,
+                legend=False,
+            )
+            ax_hist.axis("off")
+            ax_hist.set_ylim(*ylim)

src/spikeinterface/widgets/widget_list.py

@@ -28,6 +28,7 @@
 from .unit_locations import UnitLocationsWidget
 from .unit_presence import UnitPresenceWidget
 from .unit_probe_map import UnitProbeMapWidget
+from .unit_spatial import UnitSpatialDistributionsWidget
 from .unit_summary import UnitSummaryWidget
 from .unit_templates import UnitTemplatesWidget
 from .unit_waveforms_density_map import UnitWaveformDensityMapWidget
@@ -67,6 +68,7 @@
     UnitLocationsWidget,
     UnitPresenceWidget,
     UnitProbeMapWidget,
+    UnitSpatialDistributionsWidget,
     UnitSummaryWidget,
     UnitTemplatesWidget,
     UnitWaveformDensityMapWidget,
@@ -142,6 +144,7 @@
 plot_unit_locations = UnitLocationsWidget
 plot_unit_presence = UnitPresenceWidget
 plot_unit_probe_map = UnitProbeMapWidget
+plot_unit_spatial_distribution = UnitSpatialDistributionsWidget
 plot_unit_summary = UnitSummaryWidget
 plot_unit_templates = UnitTemplatesWidget
 plot_unit_waveforms_density_map = UnitWaveformDensityMapWidget