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30 Open 105 Closed
30 Open 105 Closed
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Issues list

Reimplement OME-TIFF reading
#292 opened Apr 3, 2025 by ziw-liu
Use zarr-python 3 maintenance Maintenance work NGFF OME-NGFF (OME-Zarr format)
#273 opened Feb 25, 2025 by aliddell 0.3.0
1
OME-NGFF v0.5 (with Zarr v3) implementation plan enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#271 opened Feb 18, 2025 by ziw-liu
2 tasks
0.3.0
Choose a faster default compressor NGFF OME-NGFF (OME-Zarr format) performance Speed and memory usage of the code
#266 opened Jan 21, 2025 by ziw-liu 0.2.1
1
Nice to have: __repr__ functions for ngff nodes enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#265 opened Dec 11, 2024 by ieivanov 0.3.0
contribute to ome-zarr-models-py? NGFF OME-NGFF (OME-Zarr format) upstream Issues with upstream dependencies
#260 opened Nov 22, 2024 by d-v-b
2
Implement OME-NGFF v0.5 (Zarr v3) enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#257 opened Oct 16, 2024 by ziw-liu 0.3.0
3
Position should be a subclass of BaseFOV NGFF OME-NGFF (OME-Zarr format)
#249 opened Sep 26, 2024 by talonchandler 0.3.0
get the zarr dataset size with iohub info verbose enhancement New feature or request upstream Issues with upstream dependencies
#247 opened Sep 26, 2024 by edyoshikun 0.3.0
1
CLI or similar to change the channel names. enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#236 opened Aug 5, 2024 by edyoshikun
2
TIFF UAPI TODOs documentation Improvements or additions to documentation μManager Micro-Manager files and metadata
#213 opened Mar 4, 2024 by ziw-liu
1 of 2 tasks
0.3.0
3
Add TIFF examples documentation Improvements or additions to documentation
#212 opened Feb 22, 2024 by ziw-liu 0.3.0
1
CLI to update metadata of zarr stores enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#210 opened Feb 16, 2024 by ieivanov 0.3.0
7
support ome-ngff on s3 enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#209 opened Feb 13, 2024 by d-v-b 0.3.0
5
Add tests for converting OpenCell datasets CI Continuous integration
#199 opened Oct 25, 2023 by ieivanov
better logging enhancement New feature or request
#188 opened Sep 25, 2023 by ieivanov 0.3.0
iohub appending does not change or raise warning regarding datatype NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#187 opened Sep 11, 2023 by edyoshikun
1
Test with a real HCS OME-TIFF dataset CI Continuous integration μManager Micro-Manager files and metadata
#163 opened Jul 24, 2023 by ziw-liu
5
Save grayscale data and binary masks in the OME-zarr store enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#156 opened Jun 28, 2023 by nbathreya 0.3.0
@ziw-liu
2
Per-frame metadata in UAPI enhancement New feature or request μManager Micro-Manager files and metadata NGFF OME-NGFF (OME-Zarr format)
#155 opened Jun 22, 2023 by ziw-liu 0.3.0
5
Test on NDTIFFv3 datasets CI Continuous integration μManager Micro-Manager files and metadata
#149 opened Jun 20, 2023 by ziw-liu
1
Contrast limit should follow the datatype of the dataset bug Something isn't working good first issue Good for newcomers NGFF OME-NGFF (OME-Zarr format)
#117 opened Apr 19, 2023 by edyoshikun
@edyoshikun
1
Add code coverage check on PRs CI Continuous integration good first issue Good for newcomers meta About how we organize the project
#115 opened Apr 17, 2023 by ziw-liu
Can convert pass the most important information from micromanager image plane metadata? enhancement New feature or request μManager Micro-Manager files and metadata
#103 opened Apr 5, 2023 by talonchandler
8
add TIFF writer enhancement New feature or request
#99 opened Mar 27, 2023 by rachel-banks
8
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