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A half-day training course for command line work at TACC

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Intro to High Performance Computing for Life Sciences


University of Texas Southwestern Medical Center

October 13th, 2014, 9:00am - 12:00pm

This class provides beginners and intermediate users with information on using resources at the Texas Advanced Computing Center and hands-on experience managing computational workflows using a Linux command line environment. The interactive lecture will emphasize common strategies used for interacting with clusters and high performance computing resources.

Participants must bring a laptop for the hands-on exercises. Instructions on creating a TACC account and installing required software will be distributed before the class to all registered participants.

Instructors: James Carson and John Fonner

##Agenda

Time Topic
9:00 - 9:20 Overview of TACC and the user portal
9:20 - 9:40 Shell basics
9:40 - 10:00 File movement and management
10:00 - 10:20 Piping commands and looping
10:20 - 10:40 Coffee break
10:40 - 11:00 Life sciences software and modules
11:00 - 11:20 Job submission and management
11:20 - 11:40 Customizing environment settings
11:40 - 12:00 Catch-up time and questions


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