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@kr-colab

Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 54 14

  2. locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 50 18

  3. popvae Public

    genotype dimensionality reduction with a VAE

    Python 44 9

  4. ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 58 11

  5. spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 7 3

Repositories

Showing 10 of 27 repositories
  • popgensbi_snakemake Public

    Snakemake workflow for popgensbi

    Jupyter Notebook 0 MIT 1 3 2 Updated Apr 10, 2025
  • ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 58 MIT 11 6 0 Updated Apr 2, 2025
  • relernn_nextflow Public

    Nextflow pipeline to run ReLERNN

    Nextflow 0 MIT 0 0 0 Updated Mar 21, 2025
  • diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 54 MIT 14 7 2 Updated Mar 19, 2025
  • popvae Public

    genotype dimensionality reduction with a VAE

    Python 44 9 3 2 Updated Mar 11, 2025
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    Python 4 MIT 2 7 0 Updated Mar 4, 2025
  • spatial_sweeps Public
    HTML 1 0 0 0 Updated Feb 10, 2025
  • locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 50 18 8 2 Updated Jan 20, 2025
  • msUtils Public

    A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

    C 1 MIT 1 0 0 Updated Dec 13, 2024
  • barnacle_simulation Public

    We are building a biologically and ecologically realistic SLiMulation of barnacles.

    Slim 2 0 0 0 Updated Nov 15, 2024
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