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libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

Popular repositories Loading

  1. umappp umappp Public

    C++ port of the UMAP algorithm

    C++ 50 15

  2. qdtsne qdtsne Public

    Quick-and-dirty t-SNE in C++

    C++ 10 3

  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

    R 10

  4. scranpy scranpy Public

    Single-cell data analysis, from C++ to Python

    Python 8

  5. libscran libscran Public archive

    scran, but in C++.

    C++ 7

  6. scrapper scrapper Public

    R bindings to C++ code for single-cell analysis

    R 6

Repositories

Showing 10 of 25 repositories
  • mnncorrect Public

    C++ implementation of the MNN correction algorithm

    libscran/mnncorrect’s past year of commit activity
    C++ 4 MIT 0 2 0 Updated May 6, 2025
  • qdtsne Public

    Quick-and-dirty t-SNE in C++

    libscran/qdtsne’s past year of commit activity
    C++ 10 MIT 3 1 0 Updated May 4, 2025
  • umappp Public

    C++ port of the UMAP algorithm

    libscran/umappp’s past year of commit activity
    C++ 50 BSD-2-Clause 15 7 0 Updated May 4, 2025
  • Rigraphlib Public

    Prebuilt igraph static library for Bioconductor packages

    libscran/Rigraphlib’s past year of commit activity
    R 1 0 0 0 Updated May 1, 2025
  • scran_graph_cluster Public

    Graph-based clustering for single-cell data

    libscran/scran_graph_cluster’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Apr 27, 2025
  • mumosa Public

    Multi-modal single-cell analyses

    libscran/mumosa’s past year of commit activity
    C++ 1 MIT 0 0 0 Updated Apr 27, 2025
  • nenesub Public

    Subsampling based on nearest neighbors

    libscran/nenesub’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Apr 27, 2025
  • scrapper Public

    R bindings to C++ code for single-cell analysis

    libscran/scrapper’s past year of commit activity
    R 6 0 1 0 Updated Mar 17, 2025
  • scranpy Public

    Single-cell data analysis, from C++ to Python

    libscran/scranpy’s past year of commit activity
    Python 8 MIT 0 5 1 Updated Mar 17, 2025
  • scran_qc Public

    Compute simple quality control metrics for each cell

    libscran/scran_qc’s past year of commit activity
    C++ 0 MIT 0 1 0 Updated Feb 15, 2025
View all repositories

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