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mackerell-lab

Our lab's coding home for sharing and distributing scripts/projects.

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The MacKerell Group

Welcome to the MacKerell Group Github. If you are a collaborator, please browse through and feel free to reach out to Alex or Anmol for any access to repositories.

Important Links

Home Website: https://mackerell.umaryland.edu

Recent Papers: “Deep Neural Network Model to Predict the Electrostatic Parameters in the Polarizable Classical Drude Oscillator Force Field” https://pubs.acs.org/doi/10.1021/acs.jctc.1c01166

“SILCS-RNA: Toward a Structure-Based Drug Design Approach for Targeting RNAs with Small Molecules” https://pubs.acs.org/doi/10.1021/acs.jctc.2c00381

“In silico identification of a β2-adrenoceptor allosteric site that selectively augments canonical β2AR-Gs signaling and function” https://www.pnas.org/doi/10.1073/pnas.2214024119

Current Roster

Name Email Title Degree
Dr. Alexander MacKerell Jr. [email protected] Professor Ph.D. Biochemistry, Rutgers University
Dr. Wenbo Yu [email protected] Research Assistant Professor Ph.D. Condensed Matter Physics, Hefei National Laboratory for Physical Sciences at the Microscale
Dr. Anmol Kumar [email protected] Research Associate Faculty Ph.D. Theoretical and Computational Chemistry, IIT Kanpur, India
Dr. Mingtian Zhao [email protected] Post-Doc Ph.D. Condensed Matter Physics, Nankai University
Dr. Anastasia Croitoru [email protected] Post-Doc Ph.D. Development of Force Field Methods, CNRS - Ecole Polytechnique
Dr. Yiling Nan [email protected] Post-Doc Ph.D. Civil and Environmental Engineering, University of Alberta
Dr. Prabin Baral [email protected] Post-Doc Ph.D. Computational Biophysics, Florida International University
Dr. Erik Nordquist [email protected] Post-Doc Ph.D. Computational Biophysics, University of Massachusetts Amherst
Dr. Suliman Sharif [email protected] Collaborator Ph.D. Pharmaceutical Sciences
Jihyeon Lee [email protected] Graduate Student M.Sc. Chemistry

Our Lab:

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  1. SILCS-MC-Chem-Sci-2021 SILCS-MC-Chem-Sci-2021 Public

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  2. charmm36-force-field charmm36-force-field Public

    CHARMM36 additive force field in a tarred gzipped file.

  3. silcs-water silcs-water Public

    Data for article titled "Modeling Ligand Binding Site Water Networks with Site- Identification by Ligand Competitive Saturation"

Repositories

Showing 10 of 32 repositories

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