Discussions

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  How to implement a "while a statement fails sleep x seconds and retry"

  VasLem asked May 20, 2025 in Q&A · Unanswered

  

  

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  💬

  Paired end file for STAR

  pbpayal started May 19, 2025 in General · Closed

  

  

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  ERROR ~ The AWS Access Key Id you provided does not exist in our records.

  AsanchezMD asked May 28, 2024 in Q&A · Unanswered

  

  

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  API rate limit exceeded -- Provide your GitHub user name and password to get a higher rate limit

  software/git

  lily616 asked Nov 21, 2021 in Q&A · Unanswered

  

  

  

  

  8
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  Disable debug logging in production pipeline

  bartcharbon asked May 14, 2025 in Q&A · Unanswered

  

  

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  Feature request: recognize requeued jobs in SLURM

  executor/slurm

  Hoeze asked Jan 24, 2023 in Q&A · Unanswered

  

  

  

  

  14
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  Possibility of output object with named values?

  lang/processes

  xsvato01 asked Nov 12, 2024 in Q&A · Answered

  

  

  

  

  6
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  Command 'ps' required by nextflow to collect task metrics cannot be found

  software/singularity

  pouya-codes asked Jul 29, 2022 in Q&A · Answered

  

  

  

  

  5
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  Store all .command* log files in log folder

  trvietdung asked Jun 4, 2024 in Q&A · Unanswered

  

  

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  Task output files mixed up between different subworkflow instances

  sralchemab asked Aug 20, 2024 in Q&A · Unanswered

  

  

  

  

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  Resume a partially done pipeline starts from the beginning.

  kemin711 asked Sep 17, 2024 in Q&A · Unanswered

  

  

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  💡

  Add example workflow with nf-test to nextflow CI jobs

  mattheww95 started Apr 24, 2025 in Ideas

  

  

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  parallelization after using splitFasta

  sarahfarhat asked Apr 18, 2025 in Q&A · Unanswered

  

  

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  slurmstepd: error: Detected 1 oom_kill event in StepId=11300781.0.

  thalesChagas asked Mar 31, 2025 in Q&A · Unanswered

  

  

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  What is the format of timestamp in the report/dag/trace configuration?

  gdevenyi asked Feb 16, 2024 in Q&A · Answered

  

  

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  Use job-arrays in SLURM

  executor/slurm

  VRehnberg asked Mar 21, 2025 in Q&A · Answered

  

  

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  Not finding specified pipeline.

  franci-r asked Mar 11, 2025 in Q&A · Unanswered

  

  

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  Set custom SLURM prefix

  lang/config

  xsvato01 asked Mar 18, 2025 in Q&A · Closed · Answered

  

  

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  All possible combinations within channel no overlap

  lang/operators

  davidmasp asked May 12, 2021 in Q&A · Answered

  

  

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  Is it possible to use a list for sort in collectFile() ?

  lang/operators

  ghost asked Sep 26, 2023 in Q&A · Unanswered

  

  

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  An efficient way to stage a long list of files as input using Fusion.

  storage/fusion

  zihhuafang asked Mar 4, 2025 in Q&A · Closed · Unanswered

  

  

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  Incorrect memory assign when use withLabels

  lang/config

  JiangyanYu asked Mar 4, 2025 in Q&A · Unanswered

  

  

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  Dynamic declaration of array size and accessing array job variables within script

  lang/processes

  banilmohammed asked Mar 4, 2025 in Q&A · Answered

  

  

  11
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  Can't lock the .nextflow/history file

  RongrongZhao asked May 3, 2021 in Q&A · Unanswered

  

  

  

  

  7
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  by arg of join operator do not work

  lang/operators

  Benoitdw asked Mar 3, 2025 in Q&A · Unanswered

  

  

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