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Expected behavior:
When trying to authenticate with GitHub (or other services) and failing, Nextflow should give a clear warning, then continue to try and perform what it tried unauthenticated.
Observed behavior:
Nextflow GitHub authentication fails silently, then tries to pull from GitHub unauthenticated. This sometimes works and sometimes hits the GitHub unauthenticated rate limit. Because we don't get a warning that our authentication failed, it's not clear if our token reached the rate limit or if authentication failed.
Pulling nf-core/sarek ...
WARN: Cannot read project manifest -- Cause: API rate limit exceeded -- Provide your GitHub user name and password to get a higher rate limit
API rate limit exceeded -- Provide your GitHub user name and password to get a higher rate limit
Sometimes this will work despite no authentication since GitHub does allow some amount of unauthenticated requests per hour.
Environment
Nextflow version: 24.10.5
Java version: [?]
Operating system: linux
Bash version:
Additional context
Ran into this in our build and testing pipeline which was both using outdated credentials and an incorrect config file. I thought that the problem was using password instead of token but a message telling me that Github Authentication failed would have been helpful. If this is available via verbose nextflow, I think this should be printed by default even without verbose.
UPDATE: still failing, even when using token instead of password
The text was updated successfully, but these errors were encountered:
Bug report
Expected behavior and actual behavior
Expected behavior:
When trying to authenticate with GitHub (or other services) and failing, Nextflow should give a clear warning, then continue to try and perform what it tried unauthenticated.
Observed behavior:
Nextflow GitHub authentication fails silently, then tries to pull from GitHub unauthenticated. This sometimes works and sometimes hits the GitHub unauthenticated rate limit. Because we don't get a warning that our authentication failed, it's not clear if our token reached the rate limit or if authentication failed.
Steps to reproduce the problem
nextflow.config
pull_repo.sh
Program output
Sometimes this will work despite no authentication since GitHub does allow some amount of unauthenticated requests per hour.
Environment
Additional context
Ran into this in our build and testing pipeline which was both using outdated credentials and an incorrect config file. I thought that the problem was using
password
instead oftoken
but a message telling me that Github Authentication failed would have been helpful. If this is available via verbose nextflow, I think this should be printed by default even without verbose.UPDATE: still failing, even when using
token
instead ofpassword
The text was updated successfully, but these errors were encountered: